X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.829320 MM MGAC2, 13% MPD, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties
Matthews coefficientSolvent content
3.6766.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 136.71α = 90
b = 300.14β = 113.16
c = 145.28γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2012-09-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.93098.50.07512.923736523380522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.9399.40.5382.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1RYP2.9152338042221131169198.650.1960.192850.1910.22824RANDOM67.548
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.89-0.34-62.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.308
r_sphericity_free33.553
r_sphericity_bonded18.02
r_dihedral_angle_3_deg14.655
r_dihedral_angle_4_deg13.842
r_dihedral_angle_1_deg5.155
r_long_range_B_refined4.625
r_long_range_B_other4.614
r_mcangle_it4.175
r_mcangle_other4.175
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.308
r_sphericity_free33.553
r_sphericity_bonded18.02
r_dihedral_angle_3_deg14.655
r_dihedral_angle_4_deg13.842
r_dihedral_angle_1_deg5.155
r_long_range_B_refined4.625
r_long_range_B_other4.614
r_mcangle_it4.175
r_mcangle_other4.175
r_scangle_other3.687
r_mcbond_it3.138
r_mcbond_other3.138
r_scbond_it2.919
r_scbond_other2.919
r_rigid_bond_restr1.232
r_angle_refined_deg0.912
r_angle_other_deg0.795
r_chiral_restr0.051
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms49235
Nucleic Acid Atoms
Solvent Atoms148
Heterogen Atoms347

Software

Software
Software NamePurpose
XDSdata scaling
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing