Joint X-ray/neutron structure of Human Carbonic Anhydrase II in complex with Methazolamide
X-RAY DIFFRACTION - NEUTRON DIFFRACTION
Crystallization
Crystalization Experiments |
---|
ID | Method | pH | Temperature | Details |
---|
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 298 | 1.6M Na-citrate, 50 mM Tris |
Crystal Properties |
---|
Matthews coefficient | Solvent content |
---|
2.16 | 43.03 |
Crystal Data
Unit Cell |
---|
Length ( Å ) | Angle ( ˚ ) |
---|
a = 42.893 | α = 90 |
b = 41.763 | β = 104.59 |
c = 72.949 | γ = 90 |
Symmetry |
---|
Space Group | P 1 21 1 |
---|
Diffraction
Diffraction Experiment |
---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
---|
1 | 1 | x-ray | 293 | IMAGE PLATE | RIGAKU RAXIS IV++ | | 2015-01-15 | M | SINGLE WAVELENGTH |
2 | 1 | neutron | 293 | IMAGE PLATE | MAATEL IMAGINE | ELLIPTICAL MIRRORS | 2015-01-30 | | |
Radiation Source |
---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
---|
1 | ROTATING ANODE | RIGAKU | | | |
2 | NUCLEAR REACTOR | ORNL High Flux Isotope Reactor BEAMLINE CG4D | | ORNL High Flux Isotope Reactor | CG4D |
Data Collection
Overall |
---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Rrim I (All) | Rpim I (All) | CC (Half) | R Split (All) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
---|
1 | 1.55 | 19.06 | 92.3 | 0.084 | | | | | | 16.05 | 4.7 | | 35839 | | | |
2 | 2.2 | 41.49 | 80.6 | 0.177 | | | | | | 4.1 | 3.8 | | 10417 | | | |
Highest Resolution Shell |
---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | R Merge I (Observed) | R-Sym I (Observed) | Rrim I (All) | Rpim I (All) | CC (Half) | R Split (All) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
---|
1 | 1.56 | 1.59 | | 0.382 | | | | | | 5.39 | 4.3 | |
2 | 2.19 | 2.31 | | 0.296 | | | | | | 2.6 | 3.5 | |
Refinement
Statistics |
---|
Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Cut-off Sigma (I) | Cut-off Sigma (F) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B |
---|
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | 1.56 | 19.06 | | | 35836 | 31814 | 1627 | 88.8 | | | 0.204 | 0.221 | RANDOM | 21.3 |
NEUTRON DIFFRACTION | | 2.2 | 35.94 | | | 12926 | 9193 | 456 | 71.1 | | | 0.225 | 0.276 | | 21.3 |
Temperature Factor Modeling |
---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
---|
| | | | | |
| | | | | |
RMS Deviations |
---|
Key | Refinement Restraint Deviation |
---|
x_torsion_deg | 16.2 |
x_torsion_deg | 16.2 |
x_angle_deg | 1.1 |
x_angle_deg | 1.1 |
x_torsion_impr_deg | 0.92 |
x_torsion_impr_deg | 0.92 |
x_bond_d | 0.01 |
x_bond_d | 0.01 |
Non-Hydrogen Atoms Used in Refinement |
---|
Non-Hydrogen Atoms | Number |
---|
Protein Atoms | 2049 |
Nucleic Acid Atoms | |
Solvent Atoms | 77 |
Heterogen Atoms | 15 |
Software
Software |
---|
Software Name | Purpose |
---|
nCNS | refinement |
CNS | phasing |