X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3RWLPDB ENTRY 3RWL

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.50.1 M BIS-TRIS PROPANE PH 5.5; 25% PEG 3350 (W/V); 30 MG PER ML PROTEIN; SOAK WITH 10 MM HYDROXYDODECANOIC ACID
Crystal Properties
Matthews coefficientSolvent content
2.0741.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.02α = 90
b = 71.31β = 90
c = 213.82γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120PIXELPILATUS2015-01-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2256.891000.14106.6474422
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.222.291000.632.66.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3RWL2.2256.8943348223999.970.189770.18730.23937RANDOM36.211
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.031.55-0.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.972
r_dihedral_angle_4_deg16.018
r_dihedral_angle_3_deg14.96
r_dihedral_angle_1_deg6.085
r_mcangle_it4.016
r_scbond_it3.296
r_mcbond_it2.806
r_mcbond_other2.804
r_angle_refined_deg1.8
r_angle_other_deg1.576
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.972
r_dihedral_angle_4_deg16.018
r_dihedral_angle_3_deg14.96
r_dihedral_angle_1_deg6.085
r_mcangle_it4.016
r_scbond_it3.296
r_mcbond_it2.806
r_mcbond_other2.804
r_angle_refined_deg1.8
r_angle_other_deg1.576
r_chiral_restr0.113
r_bond_refined_d0.015
r_gen_planes_refined0.009
r_bond_other_d0.007
r_gen_planes_other0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6612
Nucleic Acid Atoms
Solvent Atoms286
Heterogen Atoms116

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing