X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29330% (w/v) PEG 400, 0.05 M NaCl, 0.1 M sodium citrate pH 5.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 146.884α = 90
b = 123.379β = 117.89
c = 147.026γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2015-01-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.979490DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9564.971000.0720.04613.96.8336423
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.951.981000.8540.5436.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.95129.94333266312499.950.167260.167080.1867RANDOM37.76
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.090.271.48-1.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.359
r_dihedral_angle_4_deg19.062
r_dihedral_angle_3_deg11.945
r_dihedral_angle_1_deg9.294
r_long_range_B_refined8.466
r_long_range_B_other8.466
r_scangle_other3.981
r_scbond_it2.641
r_scbond_other2.641
r_mcangle_it2.061
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.359
r_dihedral_angle_4_deg19.062
r_dihedral_angle_3_deg11.945
r_dihedral_angle_1_deg9.294
r_long_range_B_refined8.466
r_long_range_B_other8.466
r_scangle_other3.981
r_scbond_it2.641
r_scbond_other2.641
r_mcangle_it2.061
r_mcangle_other2.06
r_angle_refined_deg1.859
r_mcbond_it1.453
r_mcbond_other1.453
r_angle_other_deg1.429
r_chiral_restr0.128
r_bond_refined_d0.021
r_gen_planes_refined0.013
r_bond_other_d0.01
r_gen_planes_other0.008
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15990
Nucleic Acid Atoms
Solvent Atoms1796
Heterogen Atoms259

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
AutoSolphasing