6Q9J

Crystal structure of reduced Aquifex aeolicus NADH-quinone oxidoreductase subunits NuoE G129S and NuoF bound to NADH


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION6.75281(NH4)2SO4, BisTris, NaCl, cryo-protection with glycerol
Crystal Properties
Matthews coefficientSolvent content
2.7254.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.637α = 90
b = 116.339β = 90
c = 190.286γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16MRh coated meridionally focussing mirror2018-11-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.000SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8348.1599.60.1530.1590.0430.99911.813.7124614
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.831.8699.51.7711.8370.4860.76114.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.8348.15118114640999.460.17310.17190.1967RANDOM28.416
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.131.88-2.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.711
r_dihedral_angle_4_deg13.124
r_dihedral_angle_3_deg12.412
r_dihedral_angle_1_deg6.306
r_angle_refined_deg1.219
r_angle_other_deg1.19
r_chiral_restr0.06
r_bond_refined_d0.004
r_gen_planes_refined0.004
r_bond_other_d0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.711
r_dihedral_angle_4_deg13.124
r_dihedral_angle_3_deg12.412
r_dihedral_angle_1_deg6.306
r_angle_refined_deg1.219
r_angle_other_deg1.19
r_chiral_restr0.06
r_bond_refined_d0.004
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9117
Nucleic Acid Atoms
Solvent Atoms977
Heterogen Atoms239

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction