7OGZ

Plant peptide hormone receptor complex H1L3S1

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5IXO

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5	291	0.2 M magnesium chloride 0.1 M HEPES pH 7.5 25 % w/v PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
3.05	59.73

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 89.838	α = 90
b = 144.501	β = 90
c = 168.432	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2019-11-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.000029	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.7	48.17	99.9	0.316	0.35	0.149	0.997	5.7	10.3		60957

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.7	2.77			1.965	2.164	0.9	0.821		10.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5IXO	2.7	47.657	60863	3065	99.82	0.354	0.3526	0.3708	48.532

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
7.128			-0.13		-6.998

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.963
r_dihedral_angle_other_1_deg	20.38
r_dihedral_angle_3_deg	14.426
r_dihedral_angle_4_deg	14.004
r_lrange_it	8.455
r_lrange_other	8.455
r_dihedral_angle_1_deg	5.583
r_mcangle_it	3.031
r_mcangle_other	3.031
r_scangle_it	2.599
r_scangle_other	2.599
r_mcbond_other	1.747
r_mcbond_it	1.746
r_scbond_it	1.573
r_scbond_other	1.573
r_angle_refined_deg	1.366
r_angle_other_deg	1.327
r_nbd_other	0.235
r_symmetry_nbd_other	0.192
r_nbd_refined	0.183
r_symmetry_nbd_refined	0.162
r_nbtor_refined	0.159
r_xyhbond_nbd_refined	0.131
r_symmetry_xyhbond_nbd_refined	0.127
r_symmetry_nbtor_other	0.083
r_ext_dist_refined_d	0.076
r_ncsr_local_group_1	0.073
r_ncsr_local_group_2	0.07
r_ncsr_local_group_3	0.056
r_symmetry_xyhbond_nbd_other	0.055
r_chiral_restr	0.054
r_bond_refined_d	0.005
r_gen_planes_refined	0.004
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11587
Nucleic Acid Atoms
Solvent Atoms	23
Heterogen Atoms	428

Software

Software
Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
Coot	model building
PHASER	phasing