7QXT

ATAD2 in complex with FragLite10

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3DAI

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	0.1M BisTris pH 6-7, 1.7-2.1M Ammonium sulphate

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 81.191	α = 90
b = 81.191	β = 90
c = 134.966	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-07-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.979	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.51	70.31	100	0.175	0.183	0.054	0.997	6.9	19.4		41986

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.51	1.54			9.569	10.598	4.466	0.239		9.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3DAI	1.51	70.31	41877	2104	99.826	0.224	0.2218	0.2558	45.639

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.817	0.908		1.817		-5.894

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.018
r_dihedral_angle_3_deg	16.519
r_dihedral_angle_4_deg	15.875
r_lrange_it	11.109
r_lrange_other	11.106
r_scangle_it	9.098
r_scangle_other	9.04
r_scbond_it	6.048
r_scbond_other	6.002
r_mcangle_it	5.222
r_mcangle_other	5.219
r_dihedral_angle_1_deg	5.106
r_mcbond_it	4.221
r_mcbond_other	4.219
r_angle_refined_deg	1.687
r_angle_other_deg	1.476
r_xyhbond_nbd_refined	0.276
r_symmetry_xyhbond_nbd_refined	0.253
r_nbd_other	0.232
r_nbd_refined	0.212
r_symmetry_nbd_refined	0.189
r_symmetry_nbd_other	0.178
r_nbtor_refined	0.172
r_symmetry_xyhbond_nbd_other	0.142
r_xyhbond_nbd_other	0.118
r_chiral_restr	0.086
r_symmetry_nbtor_other	0.082
r_bond_refined_d	0.012
r_gen_planes_refined	0.009
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1084
Nucleic Acid Atoms
Solvent Atoms	153
Heterogen Atoms	30

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
xia2	data scaling
PHASER	phasing