7QYK

ATAD2 in complex with FragLite18

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3DAI

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	0.1M BisTris pH 6-7, 1.7-2.1M Ammonium sulphate

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.009	α = 90
b = 79.009	β = 90
c = 137.016	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-06-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.915	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.43	68.51	100	0.066	0.069	0.02	1	20.3	20.7		47455

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.43	1.45			2.845	3.01	0.977	0.398		18

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3DAI	1.43	61.29	47376	2336	99.956	0.196	0.1956	0.2124	29.761

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.123	0.061		0.123		-0.398

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.575
r_dihedral_angle_4_deg	18.881
r_dihedral_angle_3_deg	14.467
r_lrange_it	10.542
r_lrange_other	10.539
r_scangle_it	7.146
r_scangle_other	7.142
r_dihedral_angle_1_deg	4.995
r_scbond_it	4.855
r_scbond_other	4.853
r_mcangle_it	3.738
r_mcangle_other	3.735
r_mcbond_other	2.673
r_mcbond_it	2.671
r_angle_refined_deg	2.196
r_angle_other_deg	1.549
r_symmetry_nbd_refined	0.35
r_nbd_other	0.259
r_nbd_refined	0.252
r_xyhbond_nbd_refined	0.25
r_symmetry_xyhbond_nbd_refined	0.218
r_symmetry_nbd_other	0.192
r_nbtor_refined	0.188
r_chiral_restr	0.113
r_xyhbond_nbd_other	0.09
r_symmetry_nbtor_other	0.085
r_bond_refined_d	0.017
r_gen_planes_refined	0.011
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1084
Nucleic Acid Atoms
Solvent Atoms	174
Heterogen Atoms	64

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
xia2	data scaling
PHASER	phasing