8BO6

COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.1M citrate buffer pH 4.5 and 20-30% PEG4000
Crystal Properties
Matthews coefficientSolvent content
2.244.11

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.12α = 90
b = 59.634β = 90
c = 67.053γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2009-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.000SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2544.56199.40.049123.097.965835
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.251.280.8250.8242.75

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTin house model1.2544.5616583588899.4130.1160.11610.140720.377
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.257-1.5110.254
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.063
r_dihedral_angle_4_deg18.861
r_dihedral_angle_3_deg11.419
r_dihedral_angle_1_deg6.835
r_lrange_it4.523
r_lrange_other4.353
r_scangle_it4.063
r_scangle_other4.062
r_scbond_it3.359
r_scbond_other3.358
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.063
r_dihedral_angle_4_deg18.861
r_dihedral_angle_3_deg11.419
r_dihedral_angle_1_deg6.835
r_lrange_it4.523
r_lrange_other4.353
r_scangle_it4.063
r_scangle_other4.062
r_scbond_it3.359
r_scbond_other3.358
r_rigid_bond_restr2.551
r_mcangle_other2.405
r_mcangle_it2.4
r_mcbond_it1.886
r_mcbond_other1.874
r_angle_refined_deg1.661
r_angle_other_deg1.483
r_symmetry_nbd_refined0.285
r_nbd_other0.213
r_nbd_refined0.197
r_symmetry_nbd_other0.191
r_nbtor_refined0.172
r_xyhbond_nbd_refined0.142
r_symmetry_xyhbond_nbd_refined0.132
r_chiral_restr0.089
r_symmetry_nbtor_other0.083
r_chiral_restr_other0.039
r_bond_refined_d0.013
r_gen_planes_refined0.011
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1880
Nucleic Acid Atoms
Solvent Atoms227
Heterogen Atoms71

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing