8BO7

COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 34


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.1M citrate buffer pH 4.5 and 20-30% PEG4000
Crystal Properties
Matthews coefficientSolvent content
2.2946.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.76α = 90
b = 60.67β = 90
c = 67.47γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 S 16M2022-08-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)0.9762PETRA III, EMBL c/o DESYP14 (MX2)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2542.57599.30.0810.99917.0913.368020
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.251.30.7852.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTin house model1.2542.57568019340199.3090.1190.11720.15719.065
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0580.429-0.487
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.837
r_dihedral_angle_4_deg16.831
r_dihedral_angle_3_deg11.857
r_dihedral_angle_1_deg6.827
r_rigid_bond_restr4.807
r_scangle_other4.314
r_scangle_it4.313
r_lrange_it4.129
r_scbond_other3.998
r_scbond_it3.964
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.837
r_dihedral_angle_4_deg16.831
r_dihedral_angle_3_deg11.857
r_dihedral_angle_1_deg6.827
r_rigid_bond_restr4.807
r_scangle_other4.314
r_scangle_it4.313
r_lrange_it4.129
r_scbond_other3.998
r_scbond_it3.964
r_lrange_other3.937
r_mcangle_other1.865
r_mcangle_it1.858
r_angle_refined_deg1.811
r_mcbond_it1.672
r_angle_other_deg1.566
r_mcbond_other1.461
r_symmetry_nbd_refined0.284
r_nbd_other0.229
r_nbd_refined0.202
r_symmetry_nbd_other0.195
r_nbtor_refined0.177
r_symmetry_xyhbond_nbd_refined0.172
r_xyhbond_nbd_refined0.149
r_chiral_restr0.104
r_symmetry_nbtor_other0.087
r_bond_refined_d0.015
r_gen_planes_refined0.011
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1875
Nucleic Acid Atoms
Solvent Atoms319
Heterogen Atoms59

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing