8BQM

X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 4)

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	193L

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	4	293	1.1 M sodium chloride, 0.1 M sodium acetate buffer pH 4.0

Crystal Properties
Matthews coefficient	Solvent content
1.97	37.58

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.74	α = 90
b = 77.74	β = 90
c = 37.38	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-06-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.17	54.97	99.6	0.04	1	37.8	21.6		39386

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.17	1.19			0.74	2.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	193L	1.17	54.97	39063	1996	99.658	0.199	0.1973	0.225	18.806

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.027			0.027		-0.054

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.356
r_dihedral_angle_4_deg	17.098
r_dihedral_angle_3_deg	14.577
r_dihedral_angle_1_deg	6.535
r_lrange_it	5.027
r_lrange_other	4.94
r_scangle_other	3.75
r_scangle_it	3.713
r_scbond_other	2.429
r_scbond_it	2.413
r_mcangle_other	2.157
r_mcangle_it	2.156
r_angle_refined_deg	2.093
r_angle_other_deg	1.62
r_mcbond_it	1.52
r_mcbond_other	1.497
r_symmetry_xyhbond_nbd_refined	0.255
r_nbd_refined	0.24
r_nbd_other	0.203
r_symmetry_nbd_other	0.2
r_xyhbond_nbd_refined	0.183
r_nbtor_refined	0.176
r_symmetry_nbd_refined	0.166
r_chiral_restr	0.113
r_symmetry_nbtor_other	0.094
r_metal_ion_refined	0.081
r_bond_refined_d	0.015
r_gen_planes_refined	0.011
r_ext_dist_refined_d	0.007
r_gen_planes_other	0.003
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	139
Heterogen Atoms	35

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing