X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
in silico modelAlphaFold 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293200 mM NH4Cl, 2.2 M (NH4)2SO4
Crystal Properties
Matthews coefficientSolvent content
2.5752.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.87α = 90
b = 72.79β = 98.04
c = 93.05γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2022-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.13097.10.05510.72.944270
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.298.90.662.13

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.13042047221397.110.224870.223340.25145RANDOM47.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.66-6.14-1.410.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.072
r_dihedral_angle_4_deg14.634
r_dihedral_angle_3_deg13.765
r_dihedral_angle_1_deg6.483
r_long_range_B_refined2.618
r_long_range_B_other2.561
r_mcangle_it1.648
r_mcangle_other1.647
r_scangle_other1.348
r_angle_refined_deg1.155
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.072
r_dihedral_angle_4_deg14.634
r_dihedral_angle_3_deg13.765
r_dihedral_angle_1_deg6.483
r_long_range_B_refined2.618
r_long_range_B_other2.561
r_mcangle_it1.648
r_mcangle_other1.647
r_scangle_other1.348
r_angle_refined_deg1.155
r_mcbond_it1.15
r_mcbond_other1.15
r_angle_other_deg1.046
r_scbond_it0.943
r_scbond_other0.943
r_rigid_bond_restr0.514
r_chiral_restr0.036
r_bond_refined_d0.002
r_bond_other_d0.002
r_gen_planes_refined0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4710
Nucleic Acid Atoms
Solvent Atoms100
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing