X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5277MPEG 2000, Ammonium Sulfate, Sodium Cacodylate
Crystal Properties
Matthews coefficientSolvent content
2.244.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.672α = 90
b = 67.281β = 90
c = 67.704γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2021-04-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1.000APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7537.5698.810.0560.0270.99723.454.734127
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.790.802

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3IXF1.7537.29827973139798.8060.1720.16970.219719.776
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.856-0.179-0.677
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.195
r_dihedral_angle_4_deg21.78
r_dihedral_angle_3_deg17.437
r_dihedral_angle_1_deg6.767
r_lrange_it6.591
r_lrange_other6.553
r_scangle_it2.591
r_scangle_other2.584
r_angle_refined_deg2.045
r_scbond_it1.691
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.195
r_dihedral_angle_4_deg21.78
r_dihedral_angle_3_deg17.437
r_dihedral_angle_1_deg6.767
r_lrange_it6.591
r_lrange_other6.553
r_scangle_it2.591
r_scangle_other2.584
r_angle_refined_deg2.045
r_scbond_it1.691
r_scbond_other1.686
r_angle_other_deg1.627
r_mcangle_other1.533
r_mcangle_it1.531
r_mcbond_it1.019
r_mcbond_other1.013
r_symmetry_nbd_refined0.291
r_nbd_refined0.255
r_nbd_other0.254
r_symmetry_xyhbond_nbd_refined0.217
r_symmetry_nbd_other0.197
r_nbtor_refined0.188
r_xyhbond_nbd_refined0.17
r_symmetry_xyhbond_nbd_other0.14
r_chiral_restr0.103
r_xyhbond_nbd_other0.095
r_symmetry_nbtor_other0.084
r_bond_refined_d0.014
r_gen_planes_refined0.012
r_gen_planes_other0.006
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2139
Nucleic Acid Atoms
Solvent Atoms187
Heterogen Atoms143

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing