8G3Z

Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in complex with 4 FNI17 Fab molecules


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.61
r_dihedral_angle_4_deg19.218
r_dihedral_angle_3_deg14.608
r_long_range_B_refined9.675
r_long_range_B_other9.675
r_dihedral_angle_1_deg8.98
r_scangle_other5.085
r_mcangle_it4.223
r_mcangle_other4.223
r_scbond_it3.026
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.61
r_dihedral_angle_4_deg19.218
r_dihedral_angle_3_deg14.608
r_long_range_B_refined9.675
r_long_range_B_other9.675
r_dihedral_angle_1_deg8.98
r_scangle_other5.085
r_mcangle_it4.223
r_mcangle_other4.223
r_scbond_it3.026
r_scbond_other3.026
r_mcbond_it2.537
r_mcbond_other2.537
r_angle_refined_deg1.595
r_angle_other_deg1.34
r_chiral_restr0.088
r_bond_other_d0.032
r_gen_planes_refined0.008
r_bond_refined_d0.007
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
4 FNI17 Fabs in complex with tetrameric NA protein from B/Massachusetts/02/2012 (Yamagata) strain
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles177249
Reported Resolution (Å)2.3
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC4
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)52.61
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION