X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7CAM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29320% Polyethylene glycol monomethyl ether 5.000, 200 mM Potassium formate
Crystal Properties
Matthews coefficientSolvent content
2.0339.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.979α = 90
b = 53.68β = 100.819
c = 113.957γ = 90
Symmetry
Space GroupI 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2022-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.11.03320BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1148.40299.10.1370.1620.0860.9967.66.715279
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.112.172.1532.5381.3280.4397

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.11348.4021527777498.8930.2140.21020.280662.476
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.471.387-2.2254.813
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.315
r_lrange_it14.194
r_lrange_other14.192
r_dihedral_angle_6_deg13.726
r_dihedral_angle_2_deg11.568
r_scangle_it8.957
r_scangle_other8.955
r_dihedral_angle_1_deg8.298
r_mcangle_it7.339
r_mcangle_other7.337
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.315
r_lrange_it14.194
r_lrange_other14.192
r_dihedral_angle_6_deg13.726
r_dihedral_angle_2_deg11.568
r_scangle_it8.957
r_scangle_other8.955
r_dihedral_angle_1_deg8.298
r_mcangle_it7.339
r_mcangle_other7.337
r_scbond_it5.993
r_scbond_other5.99
r_mcbond_it5.238
r_mcbond_other5.226
r_angle_refined_deg1.652
r_angle_other_deg0.685
r_nbd_refined0.186
r_nbtor_refined0.161
r_symmetry_nbd_other0.152
r_xyhbond_nbd_refined0.137
r_nbd_other0.113
r_symmetry_xyhbond_nbd_refined0.111
r_symmetry_nbd_refined0.11
r_chiral_restr0.083
r_symmetry_nbtor_other0.069
r_gen_planes_refined0.007
r_bond_refined_d0.006
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2323
Nucleic Acid Atoms
Solvent Atoms26
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing