GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 1Y3A designated by the RCSB


Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
1Y3A_GDP_D_358 56% 14% 0.175 0.9471.61 2.22 6 930100%1
1Y3A_GDP_A_355 52% 14% 0.184 0.9431.61 2.21 5 920100%1
1Y3A_GDP_C_357 52% 15% 0.177 0.9341.54 2.24 4 830100%1
1Y3A_GDP_B_356 50% 13% 0.184 0.9371.72 2.2 7 920100%1
1AS2_GDP_A_355 96% 8% 0.078 0.991.43 3.07 5 1200100%1
4PAN_GDP_A_401 96% 24% 0.079 0.9881.21 1.9 3 700100%1
1AS3_GDP_A_355 95% 15% 0.084 0.9881.47 2.25 5 530100%1
3UMR_GDP_A_400 94% 48% 0.08 0.981.03 0.99 1 300100%1
1SVK_GDP_A_355 88% 31% 0.086 0.961.49 1.26 6 300100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1
4LUC_GDP_A_204 100% 40% 0.036 0.9921.22 1.11 2 200100%1
5YMX_GDP_A_301 100% 54% 0.038 0.9940.92 0.85 1 -20100%1
8YL3_GDP_A_201 100% 57% 0.035 0.990.89 0.75 2 -00100%1