GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 3HDY designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3HDY_GDU_F_500 | 72% | 3% | 0.139 | 0.963 | 2.66 | 3.61 | 4 | 15 | 3 | 0 | 100% | 1 |
3HDY_GDU_D_500 | 71% | 3% | 0.15 | 0.971 | 2.66 | 3.6 | 4 | 15 | 6 | 0 | 100% | 1 |
3HDY_GDU_B_500 | 71% | 3% | 0.146 | 0.966 | 2.64 | 3.67 | 3 | 18 | 4 | 0 | 100% | 1 |
3HDY_GDU_G_500 | 67% | 3% | 0.154 | 0.964 | 2.68 | 3.62 | 4 | 16 | 2 | 0 | 100% | 1 |
3HDY_GDU_A_500 | 59% | 3% | 0.163 | 0.946 | 2.71 | 3.63 | 4 | 19 | 3 | 0 | 100% | 1 |
3HDY_GDU_H_500 | 58% | 3% | 0.165 | 0.943 | 2.67 | 3.58 | 4 | 16 | 0 | 0 | 100% | 1 |
3HDY_GDU_I_500 | 56% | 3% | 0.18 | 0.952 | 2.67 | 3.6 | 4 | 14 | 2 | 0 | 100% | 1 |
3HDY_GDU_E_500 | 51% | 3% | 0.192 | 0.948 | 2.66 | 3.63 | 3 | 17 | 1 | 0 | 100% | 1 |
3HDY_GDU_C_500 | 51% | 3% | 0.176 | 0.931 | 2.66 | 3.65 | 4 | 17 | 7 | 0 | 100% | 1 |
3HDY_GDU_J_500 | 51% | 3% | 0.193 | 0.947 | 2.67 | 3.61 | 4 | 14 | 0 | 0 | 100% | 1 |
3HDQ_GDU_A_500 | 83% | 3% | 0.125 | 0.985 | 2.66 | 3.56 | 5 | 15 | 0 | 0 | 100% | 0.8439 |
4HO9_GDU_B_300 | 99% | 24% | 0.05 | 0.983 | 1.38 | 1.71 | 4 | 9 | 0 | 0 | 100% | 1 |
6GX0_GDU_A_402 | 97% | 47% | 0.067 | 0.98 | 0.81 | 1.22 | 1 | 6 | 0 | 0 | 100% | 0.6 |
5M7D_GDU_A_402 | 97% | 44% | 0.071 | 0.983 | 0.91 | 1.26 | 1 | 6 | 0 | 0 | 100% | 1 |
7YS9_GDU_A_404 | 91% | 78% | 0.087 | 0.974 | 0.39 | 0.51 | - | 1 | 1 | 0 | 100% | 0.4 |
4LW3_GDU_A_402 | 89% | 11% | 0.104 | 0.983 | 2.67 | 1.52 | 15 | 10 | 0 | 0 | 100% | 1 |