TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 3VBM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3VBM_TYD_A_301 | 91% | 42% | 0.083 | 0.968 | 0.72 | 1.52 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3VBM_TYD_E_301 | 90% | 35% | 0.086 | 0.967 | 0.65 | 1.88 | - | 4 | 0 | 0 | 100% | 1 |
| 3VBM_TYD_C_301 | 85% | 46% | 0.089 | 0.954 | 0.71 | 1.36 | - | 2 | 0 | 0 | 100% | 1 |
| 3VBN_TYD_A_301 | 66% | 37% | 0.13 | 0.934 | 0.61 | 1.81 | - | 2 | 0 | 0 | 100% | 1 |
| 3VBP_TYD_E_301 | 62% | 31% | 0.125 | 0.916 | 0.65 | 2.05 | - | 2 | 0 | 0 | 100% | 1 |
| 3VBJ_TYD_E_301 | 57% | 37% | 0.137 | 0.913 | 0.72 | 1.73 | 1 | 4 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 99% | 22% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 99% | 32% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 99% | 33% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 98% | 31% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3RSC_TYD_A_397 | 98% | 39% | 0.055 | 0.977 | 0.74 | 1.61 | 1 | 3 | 0 | 0 | 100% | 1 |
