L2P: 2,3-DI-PHYTANYL-GLYCEROL

L2P is a Ligand Of Interest in 4MD1 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4MD1_L2P_A_1001Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4MD1_L2P_A_1001Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4MD1_L2P_A_1001Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4MD1_L2P_A_1001 28% 74% 0.099 0.90.28 0.71 - -0017%17.39
4MD1_L2P_A_1008 28% 79% 0.112 0.9150.29 0.56 - -0015%15.22
4MD1_L2P_A_1016 25% 83% 0.113 0.9050.32 0.45 - -0011%10.870000000000001
4MD1_L2P_A_1007 23% 85% 0.105 0.8870.34 0.39 - -0011%10.870000000000001
4MD1_L2P_A_1003 22% 69% 0.123 0.8810.3 0.89 - -0020%19.57
4MD1_L2P_A_1013 22% 68% 0.125 0.8780.23 1 - 10022%0.2174
4MD1_L2P_A_1006 18% 71% 0.131 0.8580.29 0.8 - -0022%0.2174
4MD1_L2P_A_1010 18% 55% 0.136 0.8590.21 1.5 - 21022%0.2174
4MD1_L2P_A_1014 18% 61% 0.141 0.8830.52 0.97 - -0011%10.870000000000001
4MD1_L2P_A_1009 16% 58% 0.138 0.8540.5 1.11 - -1015%15.22
4MD1_L2P_A_1015 13% 85% 0.128 0.830.32 0.41 - -0011%10.870000000000001
4MD1_L2P_A_1017 12% 65% 0.157 0.8470.24 1.08 - -2011%10.870000000000001
4MD1_L2P_A_1018 12% 62% 0.12 0.80.46 0.98 - -3015%15.22
4MD1_L2P_A_1004 11% 73% 0.123 0.7760.52 0.54 - -0020%19.57
4MD1_L2P_A_1005 9% 67% 0.153 0.7840.32 0.95 - -0017%17.39
4MD1_L2P_A_1011 8% 60% 0.167 0.7720.38 1.12 - 11024%0.2391
4MD1_L2P_A_1012 6% 52% 0.163 0.730.69 1.16 - 14026%0.2609
4MD1_L2P_A_1019 5% 54% 0.268 0.7870.5 1.27 - 35041%0.413
6GA3_L2P_A_311 55% 60% 0.157 0.9260.65 0.87 - 200100%1
7XJE_L2P_A_303 51% 40% 0.13 0.9050.64 1.69 - 72187%0.8696
6GAE_L2P_A_302 42% 61% 0.11 0.9080.64 0.86 - -2054%0.5435
6GAA_L2P_A_302 41% 61% 0.113 0.9090.64 0.86 - -3054%0.5435
6GAB_L2P_A_302 41% 61% 0.115 0.9110.64 0.86 - -2054%0.5435
6GA5_L2P_A_302 40% 61% 0.115 0.9080.64 0.86 - -1054%0.5435