GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 4RPH designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4RPH_GDU_B_402 | 62% | 16% | 0.179 | 0.971 | 1.94 | 1.74 | 11 | 11 | 3 | 0 | 100% | 0.8828 |
4RPH_GDU_A_402 | 59% | 16% | 0.182 | 0.966 | 1.93 | 1.78 | 11 | 11 | 4 | 0 | 100% | 0.8828 |
4RPH_GDU_C_402 | 42% | 16% | 0.202 | 0.923 | 1.93 | 1.78 | 11 | 12 | 4 | 0 | 100% | 0.8939 |
4RPG_GDU_B_402 | 79% | 6% | 0.128 | 0.974 | 2.87 | 2.24 | 21 | 17 | 3 | 0 | 100% | 0.905 |
4HO9_GDU_B_300 | 99% | 24% | 0.05 | 0.983 | 1.38 | 1.71 | 4 | 9 | 0 | 0 | 100% | 1 |
6GX0_GDU_A_402 | 97% | 47% | 0.067 | 0.98 | 0.81 | 1.22 | 1 | 6 | 0 | 0 | 100% | 0.6 |
5M7D_GDU_A_402 | 97% | 44% | 0.071 | 0.983 | 0.91 | 1.26 | 1 | 6 | 0 | 0 | 100% | 1 |
7YS9_GDU_A_404 | 91% | 78% | 0.087 | 0.974 | 0.39 | 0.51 | - | 1 | 1 | 0 | 100% | 0.4 |
4LW3_GDU_A_402 | 89% | 11% | 0.104 | 0.983 | 2.67 | 1.52 | 15 | 10 | 0 | 0 | 100% | 1 |