UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4U8O designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4U8O_UDP_B_602 | 75% | 16% | 0.126 | 0.96 | 2.05 | 1.63 | 9 | 8 | 2 | 0 | 100% | 0.91 |
4U8O_UDP_B_609 | 40% | 10% | 0.163 | 0.904 | 2.05 | 2.2 | 8 | 11 | 0 | 0 | 84% | 0.7056 |
4U8O_UDP_A_602 | 39% | 17% | 0.2 | 0.905 | 1.95 | 1.66 | 8 | 8 | 5 | 0 | 100% | 0.85 |
4U8O_UDP_A_609 | 30% | 15% | 0.187 | 0.851 | 1.92 | 1.85 | 8 | 11 | 0 | 0 | 100% | 0.78 |
4U8O_UDP_C_609 | 17% | 9% | 0.218 | 0.871 | 2.42 | 2.1 | 8 | 5 | 0 | 0 | 60% | 0.504 |
4U8O_UDP_D_609 | 12% | 9% | 0.259 | 0.864 | 2.49 | 2.02 | 8 | 5 | 0 | 0 | 60% | 0.522 |
3UTG_UDP_A_515 | 88% | 20% | 0.113 | 0.988 | 1.86 | 1.56 | 8 | 7 | 0 | 0 | 100% | 0.9 |
4U8N_UDP_B_602 | 84% | 19% | 0.124 | 0.985 | 1.85 | 1.59 | 8 | 9 | 0 | 0 | 100% | 1 |
3UKL_UDP_E_800 | 76% | 37% | 0.124 | 0.962 | 0.94 | 1.53 | 1 | 6 | 1 | 0 | 100% | 1 |
4WX1_UDP_B_602 | 67% | 18% | 0.139 | 0.948 | 1.99 | 1.59 | 9 | 7 | 1 | 0 | 100% | 0.85 |
5HHF_UDP_A_604 | 65% | 6% | 0.161 | 0.965 | 3.59 | 1.62 | 16 | 9 | 4 | 0 | 100% | 1 |
8X3Q_UDP_A_401 | 100% | 3% | 0.021 | 0.996 | 3.31 | 2.67 | 13 | 13 | 1 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |