Ligand validation:4WYD

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 4WYD designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4WYD_PLP_A_501	99%	13%	0.058	0.985	2.69	1.34	3	3	0	0	100%	0.9375
4WYD_PLP_B_501	96%	13%	0.062	0.973	2.56	1.4	3	3	0	0	100%	0.9375
4XJP_PLP_B_501	97%	9%	0.062	0.979	2.59	1.88	3	6	1	0	100%	0.9375
4WYG_PLP_A_501	96%	10%	0.072	0.98	2.79	1.57	3	3	0	0	100%	0.9375
4XJO_PLP_A_501	95%	10%	0.073	0.976	2.77	1.56	3	5	5	0	100%	0.9375
3LV2_PLP_B_502	94%	38%	0.084	0.982	1.06	1.37	2	3	0	0	100%	0.9375
4WYE_PLP_A_501	94%	8%	0.085	0.983	2.83	1.83	3	5	1	0	100%	0.9375
1EKV_PLP_A_370	100%	19%	0.019	0.998	2	1.45	5	4	1	0	94%	0.9375
2BIE_PLP_B_1361	100%	28%	0.039	0.989	1.48	1.39	4	3	1	0	100%	0.9375
4NOG_PLP_A_501	100%	38%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	21%	0.045	0.993	1.96	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	15%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.