URM: (((2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)methyl)phosphonic
(((2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric)
anhydride
URM is a Ligand Of Interest in 5C3D designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5C3D_URM_A_403 | 53% | 39% | 0.14 | 0.901 | 1.03 | 1.36 | 2 | 6 | 0 | 0 | 100% | 1 |
| 5C47_URM_A_404 | 64% | 35% | 0.122 | 0.92 | 1.08 | 1.45 | 3 | 9 | 0 | 0 | 100% | 1 |
| 5C38_URM_A_401 | 64% | 34% | 0.12 | 0.917 | 1.2 | 1.39 | 3 | 8 | 0 | 0 | 100% | 1 |
| 5C48_URM_A_403 | 55% | 31% | 0.134 | 0.903 | 1.18 | 1.56 | 2 | 9 | 0 | 0 | 100% | 1 |
| 5C3B_URM_A_403 | 42% | 36% | 0.169 | 0.886 | 1.07 | 1.43 | 4 | 5 | 0 | 0 | 100% | 0.9 |
| 5C3A_URM_A_402 | 41% | 40% | 0.139 | 0.854 | 0.99 | 1.35 | 3 | 7 | 0 | 0 | 100% | 0.9333 |
| 3MJ4_URM_D_600 | 47% | 2% | 0.205 | 0.947 | 3.4 | 3.38 | 6 | 12 | 1 | 0 | 100% | 1 |
