DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)
DGD is a Ligand Of Interest in 5V2C designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5V2C_DGD_C_516 | 95% | 43% | 0.067 | 0.983 | 0.89 | 1.29 | 5 | 10 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_c_518 | 95% | 51% | 0.062 | 0.976 | 0.91 | 0.98 | 3 | 6 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_C_518 | 94% | 51% | 0.072 | 0.981 | 0.79 | 1.1 | 2 | 6 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_c_516 | 91% | 48% | 0.079 | 0.975 | 0.9 | 1.1 | 3 | 4 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_c_517 | 90% | 45% | 0.066 | 0.974 | 1 | 1.12 | 4 | 3 | 0 | 0 | 86% | 0.8636 |
5V2C_DGD_C_517 | 90% | 49% | 0.067 | 0.976 | 0.88 | 1.09 | 3 | 2 | 0 | 0 | 85% | 0.8485 |
5V2C_DGD_H_103 | 90% | 41% | 0.079 | 0.971 | 1.07 | 1.22 | 7 | 11 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_h_104 | 86% | 39% | 0.084 | 0.963 | 1.12 | 1.26 | 5 | 8 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_d_408 | 6% | 24% | 0.353 | 0.792 | 1.32 | 1.76 | 4 | 10 | 0 | 0 | 100% | 1 |
5V2C_DGD_D_408 | 4% | 29% | 0.29 | 0.673 | 1.22 | 1.61 | 4 | 10 | 0 | 0 | 100% | 1 |
5GTI_DGD_h_103 | 96% | 52% | 0.05 | 0.967 | 0.89 | 0.96 | 3 | 3 | 0 | 0 | 94% | 0.9394 |
5WS6_DGD_h_103 | 92% | 53% | 0.065 | 0.968 | 0.86 | 0.96 | 3 | 3 | 0 | 0 | 94% | 0.9394 |
7YQ7_DGD_C_518 | 87% | 51% | 0.084 | 0.967 | 0.83 | 1.07 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_c_919 | 87% | 44% | 0.076 | 0.957 | 0.94 | 1.23 | 3 | 10 | 0 | 0 | 94% | 0.9394 |
8IR5_DGD_C_515 | 86% | 47% | 0.092 | 0.97 | 0.81 | 1.21 | 2 | 8 | 0 | 0 | 94% | 0.9394 |