5VYP
PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
PIO is a Ligand Of Interest in 5VYP designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
5VYP_PIO_N_101 | 68% | 46% | 0.158 | 0.971 | 1.17 | 0.91 | 6 | 2 | 2 | 0 | 100% | 1 |
5VYP_PIO_R_101 | 68% | 45% | 0.158 | 0.971 | 1.18 | 0.97 | 6 | 3 | 2 | 0 | 100% | 1 |
5VYP_PIO_M_101 | 65% | 44% | 0.156 | 0.957 | 1.17 | 0.99 | 6 | 2 | 1 | 0 | 100% | 1 |
5VYP_PIO_E_101 | 62% | 46% | 0.174 | 0.968 | 1.17 | 0.93 | 6 | 3 | 1 | 0 | 100% | 1 |
5VYP_PIO_B_101 | 61% | 43% | 0.177 | 0.966 | 1.18 | 1.04 | 6 | 2 | 3 | 0 | 100% | 1 |
5VYP_PIO_C_101 | 60% | 45% | 0.175 | 0.963 | 1.17 | 0.97 | 6 | 3 | 6 | 0 | 100% | 1 |
5VYP_PIO_J_101 | 60% | 44% | 0.179 | 0.967 | 1.17 | 0.99 | 6 | 3 | 3 | 0 | 100% | 1 |
5VYP_PIO_D_101 | 60% | 44% | 0.173 | 0.959 | 1.18 | 0.98 | 6 | 3 | 4 | 0 | 100% | 1 |
5VYP_PIO_T_101 | 59% | 45% | 0.186 | 0.968 | 1.16 | 0.97 | 6 | 2 | 4 | 0 | 100% | 1 |
5VYP_PIO_A_101 | 58% | 45% | 0.18 | 0.961 | 1.17 | 0.98 | 6 | 2 | 2 | 0 | 100% | 1 |
5VYP_PIO_U_101 | 58% | 45% | 0.185 | 0.964 | 1.18 | 0.97 | 6 | 3 | 1 | 0 | 100% | 1 |
5VYP_PIO_X_101 | 57% | 44% | 0.17 | 0.947 | 1.16 | 1.03 | 6 | 3 | 2 | 0 | 100% | 1 |
5VYP_PIO_L_101 | 55% | 43% | 0.167 | 0.935 | 1.18 | 1.03 | 6 | 3 | 1 | 0 | 100% | 1 |
5VYP_PIO_H_101 | 55% | 45% | 0.191 | 0.959 | 1.19 | 0.95 | 6 | 3 | 1 | 0 | 100% | 1 |
5VYP_PIO_W_101 | 54% | 42% | 0.181 | 0.948 | 1.2 | 1.06 | 6 | 3 | 2 | 0 | 100% | 1 |
5VYP_PIO_S_101 | 54% | 41% | 0.191 | 0.957 | 1.17 | 1.13 | 6 | 3 | 2 | 0 | 100% | 1 |
5VYP_PIO_I_101 | 54% | 46% | 0.185 | 0.95 | 1.17 | 0.93 | 6 | 3 | 2 | 0 | 100% | 1 |
5VYP_PIO_G_101 | 53% | 45% | 0.196 | 0.959 | 1.18 | 0.97 | 6 | 2 | 0 | 0 | 100% | 1 |
5VYP_PIO_F_101 | 53% | 45% | 0.193 | 0.954 | 1.17 | 0.98 | 6 | 3 | 3 | 0 | 100% | 1 |
5VYP_PIO_P_101 | 52% | 45% | 0.2 | 0.96 | 1.17 | 0.96 | 6 | 2 | 2 | 0 | 100% | 1 |
5VYP_PIO_Q_101 | 51% | 45% | 0.197 | 0.953 | 1.16 | 0.98 | 6 | 2 | 1 | 0 | 100% | 1 |
5VYP_PIO_O_101 | 51% | 44% | 0.2 | 0.956 | 1.18 | 0.99 | 6 | 3 | 3 | 0 | 100% | 1 |
5VYP_PIO_V_101 | 51% | 45% | 0.201 | 0.957 | 1.17 | 0.98 | 6 | 2 | 3 | 0 | 100% | 1 |
5VYP_PIO_K_101 | 48% | 46% | 0.194 | 0.937 | 1.17 | 0.94 | 6 | 2 | 1 | 0 | 100% | 1 |
4CQK_PIO_N_1048 | 97% | 51% | 0.068 | 0.983 | 0.94 | 0.97 | 2 | 2 | 3 | 0 | 100% | 1 |
6CS9_PIO_B_101 | 59% | 44% | 0.131 | 0.911 | 1.21 | 0.96 | 6 | 2 | 4 | 0 | 100% | 1 |
5KUM_PIO_A_401 | 35% | 41% | 0.159 | 0.928 | 0.74 | 1.52 | - | 8 | 0 | 0 | 55% | 0.5532 |
3SPG_PIO_A_400 | 35% | 40% | 0.214 | 0.936 | 1.16 | 1.18 | 2 | 4 | 0 | 0 | 81% | 0.8085 |
3SPH_PIO_A_400 | 26% | 39% | 0.235 | 0.904 | 1.19 | 1.21 | 2 | 4 | 0 | 0 | 85% | 0.8511 |