8YF: (2R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-(2-methanimidamidoethylsulfanyl)-2,3-dihydro-1H-pyrrole
-5-carboxylic acid
8YF is a Ligand Of Interest in 5YPI designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5YPI_8YF_B_303 | 86% | 5% | 0.101 | 0.97 | 3.69 | 1.79 | 2 | 4 | 0 | 0 | 100% | 0.99 |
5YPI_8YF_A_303 | 81% | 5% | 0.107 | 0.96 | 3.63 | 1.76 | 2 | 3 | 0 | 0 | 100% | 0.89 |
5YPI_8YF_D_303 | 64% | 5% | 0.149 | 0.948 | 3.58 | 1.83 | 2 | 3 | 0 | 0 | 100% | 0.87 |
5YPI_8YF_G_303 | 62% | 4% | 0.154 | 0.948 | 3.65 | 2.1 | 2 | 5 | 0 | 0 | 100% | 0.88 |
5YPI_8YF_E_303 | 60% | 5% | 0.147 | 0.933 | 3.62 | 1.79 | 2 | 3 | 0 | 0 | 100% | 0.96 |
5YPI_8YF_F_303 | 59% | 6% | 0.165 | 0.948 | 3.55 | 1.67 | 2 | 4 | 0 | 0 | 100% | 0.85 |
5YPI_8YF_C_303 | 46% | 6% | 0.195 | 0.93 | 3.59 | 1.64 | 2 | 2 | 0 | 0 | 100% | 0.88 |
5YPI_8YF_H_303 | 26% | 6% | 0.197 | 0.837 | 3.62 | 1.61 | 2 | 3 | 1 | 0 | 100% | 0.98 |
8QNZ_8YF_AAA_301 | 68% | 49% | 0.133 | 0.945 | 0.96 | 1.02 | 1 | 1 | 1 | 0 | 100% | 0.6143 |
6RZR_8YF_A_311 | 67% | 52% | 0.12 | 0.929 | 0.77 | 1.07 | - | - | 0 | 0 | 100% | 1 |
7LNL_8YF_A_301 | 67% | 10% | 0.13 | 0.937 | 2.59 | 1.75 | 5 | 4 | 1 | 0 | 100% | 1 |
7LR9_8YF_A_301 | 50% | 10% | 0.164 | 0.914 | 2.59 | 1.75 | 5 | 4 | 1 | 0 | 100% | 1 |
6XJ8_8YF_A_301 | 10% | 32% | 0.272 | 0.777 | 1.34 | 1.36 | 2 | 2 | 0 | 0 | 100% | 0.79 |