CDP: CYTIDINE-5'-DIPHOSPHATE
CDP is a Ligand Of Interest in 8VHP designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
8VHP_CDP_D_809 | 98% | 52% | 0.051 | 0.975 | 0.89 | 0.96 | - | 2 | 2 | 0 | 100% | 1 |
8VHP_CDP_A_809 | 97% | 51% | 0.058 | 0.973 | 0.93 | 0.96 | 1 | 1 | 2 | 0 | 100% | 1 |
8VHP_CDP_H_808 | 96% | 53% | 0.061 | 0.971 | 0.9 | 0.93 | - | 2 | 2 | 0 | 100% | 1 |
8VHP_CDP_E_809 | 96% | 53% | 0.062 | 0.97 | 0.88 | 0.94 | - | 1 | 2 | 0 | 100% | 1 |
8VHP_CDP_G_808 | 95% | 52% | 0.064 | 0.967 | 0.9 | 0.94 | 1 | 1 | 2 | 0 | 100% | 1 |
8VHP_CDP_C_809 | 92% | 51% | 0.067 | 0.958 | 0.89 | 1.01 | - | 1 | 2 | 0 | 100% | 1 |
8VHP_CDP_B_809 | 92% | 52% | 0.07 | 0.961 | 0.92 | 0.94 | 1 | - | 2 | 0 | 100% | 1 |
8VHP_CDP_F_809 | 91% | 50% | 0.071 | 0.956 | 0.9 | 1.01 | 1 | 1 | 2 | 0 | 100% | 1 |
5CNS_CDP_A_801 | 55% | 56% | 0.2 | 0.969 | 0.78 | 0.93 | - | 1 | 1 | 0 | 100% | 1 |
6SDK_CDP_C_301 | 100% | 5% | 0.043 | 0.987 | 3.72 | 1.58 | 12 | 6 | 0 | 0 | 100% | 1 |
3BOS_CDP_B_300 | 100% | 55% | 0.046 | 0.988 | 0.92 | 0.81 | 1 | 1 | 0 | 0 | 100% | 1 |
2VBU_CDP_A_1133 | 96% | 45% | 0.078 | 0.989 | 0.89 | 1.22 | - | 3 | 0 | 0 | 100% | 1 |
1ORR_CDP_B_1301 | 96% | 34% | 0.06 | 0.97 | 1.28 | 1.32 | 3 | 6 | 0 | 0 | 100% | 1 |
4FKX_CDP_C_201 | 95% | 60% | 0.073 | 0.979 | 0.79 | 0.76 | - | - | 0 | 0 | 100% | 1 |