RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "coaD"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 793 Structures.

Refinements

Structure Determination Methodology

	computational (680)
	experimental (113)

CSM Source Database

AlphaFoldDB (680)

pLDDT Global Quality Score

	70.0 - 90.0 (6)
	> 90.0 (674)

Scientific Name of Source Organism

	Escherichia coli K-12 (22)
	Mycobacteroides abscessus (19)
	Mycobacterium tuberculosis (11)
	Mycobacteroides abscessus ATCC 19977 (9)
	Acinetobacter baumannii (8)
	Enterobacter sp. 638 (8)
	Helicobacter pylori 26695 (7)
	Acinetobacter baumannii ACICU (6)
	Mycobacterium tuberculosis H37Rv (5)
	Pseudomonas aeruginosa 2192 (4)

More...

Taxonomy

	Bacteria (776)
	Archaea (16)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (113)

Polymer Entity Type

Protein (793)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (60)
	2.0 - 2.5 (36)
	2.5 - 3.0 (12)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (22)
	2015 - 2019 (49)
	2020 - 2024 (716)

Enzyme Classification Name

	Transferases (792)
	Hydrolases (2)

Symmetry Type

	Asymmetric (692)
	Dihedral (87)
	Cyclic (27)
	Octahedral (19)

SCOP Classification

	Alpha and beta proteins (a/b) (79)
	Artifacts (31)

AllSelected

1 to 25 of 793 Structures

Page 1 of 32

Sort by

Explore in 3D

1O6B	Download File View File

Crystal structure of phosphopantetheine adenylyltransferase with ADP

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ADP, CL, MG, PO4

Explore in 3D

1TFU	Download File View File

phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis

Morris, V.K., Izard, T., TB Structural Genomics Consortium (TBSGC)

(2004) Protein Sci 13: 2547-2552

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)

Explore in 3D

1VLH	Download File View File

Crystal structure of Phosphopantetheine adenylyltransferase (TM0741) from Thermotoga maritima at 2.20 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-08-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermotoga maritima
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	MPD, PNS

Explore in 3D

3DO8	Download File View File

The crystal structure of the protein with unknown function from Archaeoglobus fulgidus

Zhang, R., Wu, R., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2008) To be published

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Phosphopantetheine adenylyltransferase (protein)

Explore in 3D

3F3M	Download File View File

Six Crystal Structures of Two Phosphopantetheine Adenylyltransferases Reveal an Alternative Ligand Binding Mode and an Associated Structural Change

Lee, H.H., Yoon, H.J., Suh, S.W.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 987-991

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Staphylococcus aureus
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	PPS

Explore in 3D

3K9W	Download File View File

Crystal structure of phosphopantetheine adenylyltransferase from Burkholderia pseudomallei with hydrolyzed 3'-dephospho Coenzyme A

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1032-1037

Released	2009-11-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	4PS, ACT, ADE, PG4, SO4

Explore in 3D

3L92	Download File View File

Phosphopantetheine adenylyltransferase from Yersinia pestis complexed with coenzyme A.

Osipiuk, J., Maltseva, N., Makowska-grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Yersinia pestis CO92
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	COA

Explore in 3D

3L93	Download File View File

Phosphopantetheine adenylyltransferase from Yersinia pestis.

Osipiuk, J., Maltseva, N., Makowska-grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Yersinia pestis CO92
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	FMT

Explore in 3D

3LCJ	Download File View File

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis complexed with CoA

Timofeev, V.I., Smirnova, E.A., Chupova, L.A., Esipov, R.S., Kuranova, I.P.

(2010) Crystallogr Rep 55: 1050-1059

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	COA

Explore in 3D

3NBA	Download File View File

Phosphopantetheine Adenylyltranferase from Mycobacterium tuberculosis in complex with adenosine-5'-[(alpha,beta)-methyleno]triphosphate (AMPCPP)

Wubben, T.J., Mesecar, A.D.

(2010) J Mol Biology 404: 202-219

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	APC, MG

Explore in 3D

3NBK	Download File View File

Phosphopantetheine Adenylyltransferase from Mycobacterium tuberculosis in complex with 4'-phosphopantetheine

Wubben, T.J., Mesecar, A.D.

(2010) J Mol Biology 404: 202-219

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	NI, PNS

Explore in 3D

3ND5	Download File View File

Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis

Yoon, H.J., Lee, H.H., Suh, S.W.

(2011) Mol Cells 32: 431-435

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Enterococcus faecalis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)

Explore in 3D

3ND6	Download File View File

Crystal structure of phosphopantetheine adenylyltransferase (PPAT) in complex with ATP from Enterococcus faecalis

Yoon, H.J., Lee, H.H., Suh, S.W.

(2011) Mol Cells 32: 431-435

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Enterococcus faecalis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ATP

Explore in 3D

3ND7	Download File View File

Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine

Yoon, H.J., Lee, H.H., Suh, S.W.

(2011) Mol Cells 32: 431-435

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterococcus faecalis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	PNY

Explore in 3D

3NV7	Download File View File

Crystal structure of H.pylori phosphopantetheine adenylyltransferase mutant I4V/N76Y

Chen, C.H., Cheng, C.S., Yin, H.S.

To be published

Released	2011-07-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Helicobacter pylori 26695
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ACY, SO4

Explore in 3D

3OTW	Download File View File

Structural and Functional Studies of Helicobacter pylori Wild-Type and Mutated Proteins Phosphopantetheine adenylyltransferase

Yin, H.S., Cheng, C.S., Chen, C.G., Luo, Y.C., Chen, W.T., Cheng, S.Y.

To be published

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Helicobacter pylori 26695
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	COA, SO4

Explore in 3D

3PNB	Download File View File

Phosphopantetheine Adenylyltransferase from Mycobacterium tuberculosis in complex with coenzyme A

Wubben, T.J., Mesecar, A.D.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 541-545

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	COA

Explore in 3D

3PXU	Download File View File

Crystal structure of phosphopantetheine adenylyltransferase from Burkholderia pseudomallei bound to dephospho-coenzyme A

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1032-1037

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	COD, GOL, SO4

Explore in 3D

3RBA	Download File View File

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis complexed with DPCoA

Timofeev, V.I., Smirnova, E.A., Chupova, L.A., Esipov, R.S., Kuranova, I.P.

(2012) Crystallogr Rep 57: 96

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	COD

Explore in 3D

3RFF	Download File View File

Phosphopantetheine adenylyltransferase from Mycobacterium Tuberculosis (1.76 A resolution)

Timofeev, V.I., Smirnova, E.A., Chupova, L.A., Esipov, R.S., Kuranova, I.P.

(2012) Crystallogr Rep 57: 96

Released	2012-04-11
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)

Explore in 3D

3RHS	Download File View File

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis complexed with CoA

Timofeev, V.I., Smirnova, E.A., Chupova, L.A., Esipov, R.S., Kuranova, I.P.

(2012) Crystallogr Rep 57: 97

Released	2012-04-11
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	COA

Explore in 3D

3UC5	Download File View File

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis complexed with ATP

Timofeev, V.I., Smirnova, E.A., Chupova, L.A., Esipov, R.S., Kuranova, I.P.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1660-1670

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ATP

Explore in 3D

3X1J	Download File View File

Crystal Structure of Phosphopantetheine adenylyltransferase (PPAT/CoaD) with AcCoA from Pseudomonas aeruginosa

Chatterjee, R., Datta, S.

(2016) Biochim Biophys Acta 1864: 773-786

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.334 Å
Organisms	Pseudomonas aeruginosa 2192
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ACO, DMS, GOL, PEG, PO4

Explore in 3D

3X1K	Download File View File

crystal structure of Phosphoapantetheine adenylyltransferase PPAT/CoaD with AMP-PNP from Pseudomonas aerugonosa

Chatterjee, R., Datta, S.

(2016) Biochim Biophys Acta 1864: 773-786

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.547 Å
Organisms	Pseudomonas aeruginosa 2192
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ANP, DMS, FMT, GOL, PO4

Explore in 3D

3X1M	Download File View File

Crystal structure of Phosphopantetheine adenylyltransferase/PPAT from Pseudomonas aeruginosa with CoA

Chatterjee, R., Datta, S.

(2016) Biochim Biophys Acta 1864: 773-786

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa 2192
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ACT, COA, DMS, FMT, PEG