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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Clostridium botulinum A str. Hall"

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Search Summary

This query matches 306 Structures.

Refinements

Structure Determination Methodology

	computational (290)
	experimental (16)

CSM Source Database

AlphaFoldDB (290)

pLDDT Global Quality Score

	70.0 - 90.0 (63)
	> 90.0 (227)

Scientific Name of Source Organism

	Clostridium botulinum A str. Hall (306)
	synthetic construct (2)
	Clostridium botulinum A (1)
	Lama glama (1)
	Mus musculus (1)
	Vicugna pacos (1)

Taxonomy

	Bacteria (306)
	Eukaryota (3)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (306)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (13)
	2015 - 2019 (1)
	2020 - 2024 (290)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (69)
	Hydrolases (49)
	Ligases (30)
	Lyases (15)
	Isomerases (9)
	Oxidoreductases (8)
	Translocases (4)

Symmetry Type

	Asymmetric (305)
	Cyclic (1)
	Dihedral (1)

SCOP Classification

	Artifacts (9)
	Alpha and beta proteins (a+b) (11)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 306 Structures

Page 1 of 13

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3IRD \| pdb_00003ird	Download File View File

Structure of dihydrodipicolinate synthase from Clostridium botulinum

Dobson, R.C.J., Atkinson, S., Perugini, M.A.

To be published

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Dihydrodipicolinate synthase (protein)
Unique Ligands	CL, GOL, MLT, NA

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3K3Q \| pdb_00003k3q	Download File View File

Crystal Structure of a Llama Antibody complexed with the C. Botulinum Neurotoxin Serotype A Catalytic Domain

Thompson, A.A., Dong, J., Marks, J.D., Stevens, R.C.

(2010) J Mol Biology 397: 1106-1118

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Clostridium botulinum A str. Hall Lama glama
Macromolecule	Botulinum neurotoxin type A (protein) llama Aa1 VHH domain (protein)
Unique Ligands	ZN

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3QIX \| pdb_00003qix	Download File View File

Crystal Structure of BoNT/A LC with Zinc bound

Thompson, A.A., Han, G.W., Stevens, R.C.

(2011) Biochemistry 50: 4019-4028

Released	2011-04-13
Method	X-RAY DIFFRACTION 2.413 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein)
Unique Ligands	EDO, ZN

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3QIY \| pdb_00003qiy	Download File View File

Crystal Structure of BoNT/A LC complexed with Hydroxamate-based Inhibitor PT-1

Thompson, A.A., Han, G.W., Stevens, R.C.

(2011) Biochemistry 50: 4019-4028

Released	2011-04-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein)
Unique Ligands	EDO, QI1, ZN

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3QIZ \| pdb_00003qiz	Download File View File

Crystal Structure of BoNT/A LC complexed with Hydroxamate-based Inhibitor PT-2

Thompson, A.A., Han, G.W., Stevens, R.C.

(2011) Biochemistry 50: 4019-4028

Released	2011-04-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein)
Unique Ligands	PEG, QI2, ZN

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3QJ0 \| pdb_00003qj0	Download File View File

Crystal Structure of BoNT/A LC complexed with Hydroxamate-based Inhibitor PT-3

Thompson, A.A., Han, G.W., Stevens, R.C.

(2011) Biochemistry 50: 4019-4028

Released	2011-04-13
Method	X-RAY DIFFRACTION 2.301 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein)
Unique Ligands	EDO, QI3, ZN

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3QW5 \| pdb_00003qw5	Download File View File

Crystal structure of the protease domain of Botulinum Neurotoxin Serotype A with a peptide inhibitor RRGF

Kumaran, D., Swaminathan, S.

(2012) Acta Crystallogr D Biol Crystallogr 68: 511-520

Released	2012-02-08
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein) inhibitory peptide RRGF (protein)
Unique Ligands	SO4, ZN

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3QW6 \| pdb_00003qw6	Download File View File

Crystal structure of the protease domain of Botulinum Neurotoxin Serotype A with a peptide inhibitor RYGC

Kumaran, D., Swaminathan, S.

(2012) Acta Crystallogr D Biol Crystallogr 68: 511-520

Released	2012-02-08
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein) inhibitory peptide RYGC (protein)
Unique Ligands	NA, SO4, ZN

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3QW7 \| pdb_00003qw7	Download File View File

Crystal structure of the protease domain of Botulinum Neurotoxin Serotype A with a peptide inhibitor RRFC

Kumaran, D., Swaminathan, S.

(2012) Acta Crystallogr D Biol Crystallogr 68: 511-520

Released	2012-02-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein) inhibitory peptide RRFC (protein)
Unique Ligands	NA, SO4, ZN

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3QW8 \| pdb_00003qw8	Download File View File

Crystal structure of the protease domain of Botulinum Neurotoxin Serotype A with a peptide inhibitor CRGC

Kumaran, D., Swaminathan, S.

(2012) Acta Crystallogr D Biol Crystallogr 68: 511-520

Released	2012-02-08
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein) inhibitory peptide CRGC (protein)
Unique Ligands	EDO, NA, SO4, ZN

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4KS6 \| pdb_00004ks6	Download File View File

Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134S mutant with covalent inhibitor that modifies Cys-165 causing disorder in 166-174 stretch

Stura, E.A., Vera, L., Guitot, K., Dive, V.

To be published

Released	2014-06-25
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Clostridium botulinum A str. Hall synthetic construct
Macromolecule	Botulinum neurotoxin A light chain (protein) Peptide inhibitor MPT-DPP-DAR-G-DPN-NH2 (protein)
Unique Ligands	EDO, GOL, PEG, PGO, SO4, ZN

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4KTX \| pdb_00004ktx	Download File View File

Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134S mutant with covalent inhibitor that modifies Cys-165 causing disorder in 167-174 stretch

Stura, E.A., Vera, L., Guitot, K., Dive, V.

To be published

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Clostridium botulinum A str. Hall synthetic construct
Macromolecule	Botulinum neurotoxin A light chain (protein) Peptide inhibitor MPT-DPP-ARG-G-LEU-NH2 (protein)
Unique Ligands	GOL, PGO, SO4, ZN

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4KUF \| pdb_00004kuf	Download File View File

Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134 mutant with MTSEA modified Cys-165 causing stretch disorder

Stura, E.A., Vera, L., Ptchelkine, D., Bakirci, H., Garcia, S., Dive, V.

To be published

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.697 Å
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin A light chain (protein)
Unique Ligands	DMS, EDO, GOL, LMR, NA, ZN

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4QD2 \| pdb_00004qd2	Download File View File

Molecular basis for disruption of E-cadherin adhesion by botulinum neurotoxin A complex

Lee, K., Zhong, X., Gu, S., Kruel, A., Dorner, M.B., Perry, K., Rummel, A., Dong, M., Jin, R.

(2014) Science 344: 1405-1410

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Clostridium botulinum A str. Hall Mus musculus
Macromolecule	Cadherin-1 (protein) Hemagglutinin component HA17 (protein) Hemagglutinin component HA33 (protein) Hemagglutinin component HA70 (protein)
Unique Ligands	CA

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5L21 \| pdb_00005l21	Download File View File

Crystal structure of BoNT/A receptor binding domain in complex with VHH C2

Yao, G., Jin, R.

(2017) Sci Rep 7: 7438-7438

Released	2017-08-09
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Clostridium botulinum A str. Hall Vicugna pacos
Macromolecule	Botulinum neurotoxin type A (protein) VHH-C2 (protein)

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9ARL \| pdb_00009arl	Download File View File

CryoEM structure of BoNT-NTNH-OrfX2 complex from Clostridium botulinum strain A1-ST7B, major class

Gao, L.

(2025) Nat Struct Mol Biol

Released	2025-01-22
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Clostridium botulinum A Clostridium botulinum A str. Hall
Macromolecule	Botulinum neurotoxin type A (protein) NtnH (protein) OrfX2 (protein)

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AF_AFA5HXP7F1	Download File

Computed structure model of Chromosomal replication initiator protein DnaA

AlphaFold DB	AF-A5HXP7-F1
pLDDT (global)	87.59
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Chromosomal replication initiator protein DnaA (protein)

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AF_AFA5HXQ7F1	Download File

Computed structure model of UPF0182 protein CBO0011/CLC_0020

AlphaFold DB	AF-A5HXQ7-F1
pLDDT (global)	90
Organisms	Clostridium botulinum A str. Hall
Macromolecule	UPF0182 protein CBO0011/CLC_0020 (protein)

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AF_AFA5HXR1F1	Download File

Computed structure model of Serine--tRNA ligase

AlphaFold DB	AF-A5HXR1-F1
pLDDT (global)	95.93
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Serine--tRNA ligase (protein)

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AF_AFA5HXS0F1	Download File

Computed structure model of Phosphatidylserine decarboxylase proenzyme

AlphaFold DB	AF-A5HXS0-F1
pLDDT (global)	91.62
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Phosphatidylserine decarboxylase proenzyme (protein)

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AF_AFA5HXS7F1	Download File

Computed structure model of Nucleoid-associated protein CBO0032/CLC_0052

AlphaFold DB	AF-A5HXS7-F1
pLDDT (global)	89.87
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Nucleoid-associated protein CBO0032/CLC_0052 (protein)

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AF_AFA5HXS8F1	Download File

Computed structure model of Recombination protein RecR

AlphaFold DB	AF-A5HXS8-F1
pLDDT (global)	95.03
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Recombination protein RecR (protein)

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AF_AFA5HXT1F1	Download File

Computed structure model of Sugar fermentation stimulation protein homolog

AlphaFold DB	AF-A5HXT1-F1
pLDDT (global)	96.56
Organisms	Clostridium botulinum A str. Hall
Macromolecule	Sugar fermentation stimulation protein homolog (protein)

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AF_AFA5HXW3F1	Download File

Computed structure model of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

AlphaFold DB	AF-A5HXW3-F1
pLDDT (global)	97.17
Organisms	Clostridium botulinum A str. Hall
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)