RCSB PDB: Search

1K0P \| pdb_00001k0p	Download File View File

NMR Structures of the Zinc Finger Domain of Human DNA Polymerase-alpha

Yang, W.W., Evanics, F., Basu, S., Bose, R.N.

(2003) Biochim Biophys Acta 1651: 163-171

Released	2003-06-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA polymerase alpha catalytic subunit (protein)

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1NQP \| pdb_00001nqp	Download File View File

Crystal structure of Human hemoglobin E at 1.73 A resolution

Dasgupta, J., Sen, U., Choudhury, D., Dutta, P., Basu, S., Chakrabarti, A., Chakrabarty, A., Dattagupta, J.K.

(2004) Biochem Biophys Res Commun 303: 619-623

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin alpha chain (protein) Hemoglobin beta chain (protein)
Unique Ligands	CYN, HEM

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4FJR \| pdb_00004fjr	Download File View File

Mode of interaction of Merocyanine 540 with HEW Lysozyme

Mitra, P., Banerjee, M., Basu, S., Biswas, S.

To be published

Released	2013-07-03
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	0UF, CL

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4KXI \| pdb_00004kxi	Download File View File

Crystallographic study of the complex of Ni(II) Schiff base complex and HEW Lysozyme

Koley Seth, B., Ray, A., Basu, S., Biswas, S.

To be published

Released	2014-05-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, LCP, NI, SNF

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4NC3 \| pdb_00004nc3	Download File View File

Crystal structure of the 5-HT2B receptor solved using serial femtosecond crystallography in lipidic cubic phase.

Liu, W., Wacker, D., Gati, C., Han, G.W., James, D., Wang, D., Nelson, G., Weierstall, U., Katritch, V., Barty, A., Zatsepin, N.A., Li, D., Messerschmidt, M., Boutet, S., Williams, G.J., Koglin, J.E., Seibert, M.M., Wang, C., Shah, S.T.A., Basu, S., Fromme, R., Kupitz, C., Rendek, K.N., Grotjohann, I., Fromme, P., Kirian, R.A., Beyerlein, K.R., White, T.A., Chapman, H.N., Caffrey, M., Spence, J.C.H., Stevens, R.C., Cherezov, V., GPCR Network (GPCR)

(2013) Science 342: 1521-1524

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Chimera protein of human 5-hydroxytryptamine receptor 2B and E. Coli soluble cytochrome b562 (protein)
Unique Ligands	CLR, DGA, ERM, OLA, OLC, PEG, PLM, TRS

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4O9R \| pdb_00004o9r	Download File View File

Human Smoothened Receptor structure in complex with cyclopamine

Wang, C., Weierstall, U., James, D., White, T.A., Wang, D., Liu, W., Spence, J.C.H., Doak, R.B., Nelson, G., Fromme, P., Fromme, R., Grotjohann, I., Kupitz, C., Zatsepin, N.A., Liu, H., Basu, S., Wacker, D., Han, G.W., Katritch, V., Boutet, S., Messerschmidt, M., Willams, G.J., Koglin, J.E., Seibert, M.M., Klinker, M., Gati, C., Shoeman, R.L., Barty, A., Chapman, H.N., Kirian, R.A., Beyerlein, K.R., Stevens, R.C., Li, D., Shah, S.T.A., Howe, N., Caffrey, M., Cherezov, V., GPCR Network (GPCR)

(2014) Nat Commun 5: 3309-3309

Released	2014-03-05
Method	X-RAY DIFFRACTION 3.204 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Smoothened homolog/Soluble cytochrome b562 chimeric protein (protein)
Unique Ligands	CY8

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4PBU \| pdb_00004pbu	Download File View File

Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state

Kupitz, C., Basu, S., Grotjohann, I., Fromme, R., Zatsepin, N., Rendek, K.N., Hunter, M., Shoeman, R.L., White, T.A., Wang, D., James, D., Yang, J.H., Cobb, D.E., Reeder, B., Sierra, R.G., Liu, H., Barty, A., Aquila, A., Deponte, D., Kirian, R.A., Bari, S., Bergkamp, J.J., Beyerlein, K., Bogan, M.J., Caleman, C., Chao, T.-C., Conrad, C.E., Davis, K.M., Fleckenstein, H., Galli, L., Hau-Riege, S.P., Kassemeyer, S., Laksmono, H., Liang, M., Lomb, L., Marchesini, S., Martin, A.V., Messerschmidt, M., Milathianaki, D., Nass, K., Ros, A., Roy-Chowdhury, S., Schmidt, K., Seibert, M., Steinbrener, J., Stellato, F., Yan, L., Yoon, C., Moore, T.A., Moore, A.L., Pushkar, Y., Williams, G.J., Boutet, S., Doak, R.B., Weierstall, U., Frank, M., Chapman, H.N., Spence, J.C.H., Fromme, P.

(2014) Nature 513: 261-265

Released	2014-07-16
Method	X-RAY DIFFRACTION 5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, MG, OEX, PHO, PL9, SQD

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4Q70 \| pdb_00004q70	Download File View File

Light Harvesting Protein Phycocyanin in high resolution using a femtosecond X-Ray laser

Fromme, R., Roy-Chowdhury, S., Basu, S., Yoon, C., Fromme, P.

To be published

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	CYC

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4RVY \| pdb_00004rvy	Download File View File

Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)

Kupitz, C., Basu, S., Grotjohann, I., Fromme, R., Zatsepin, N., Rendek, K.N., Hunter, M., Shoeman, R.L., White, T.A., Wang, D., James, D., Yang, J.-H., Cobb, D.E., Reeder, B., Sierra, R.G., Liu, H., Barty, A., Aquila, A., Deponte, D., Kirian, R., Bari, S., Bergkamp, J.J., Beyerlein, K., Bogan, M.J., Caleman, C., Chao, T.-C., Conrad, C.E., Davis, K.M., Fleckenstein, H., Galli, L., Hau-Riege, S.P., Kassemeyer, S., Laksmono, H., Liang, M., Lomb, L., Marchesini, S., Martin, A.V., Messerschmidt, M., Milathianaki, D., Nass, K., Ros, A., Roy-Chowdhury, S., Schmidt, K., Seibert, M., Steinbrener, J., Stellato, F., Yan, L., Yoon, C., Moore, T.A., Moore, A.L., Pushkar, Y., Williams, G.J., Boutet, S., Doak, R.B., Weierstall, U., Frank, M., Chapman, H.N., Spence, J.C.H., Fromme, P.

(2014) Nature 513: 261-265

Released	2015-11-04
Method	X-RAY DIFFRACTION 5.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, MG, OEX, PHO, PL9, SQD

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4RWA \| pdb_00004rwa	Download File View File

Synchrotron structure of the human delta opioid receptor in complex with a bifunctional peptide (PSI community target)

Fenalti, G., Zatsepin, N.A., Betti, C., Giguere, P., Han, G.W., Ishchenko, A., Liu, W., Guillemyn, K., Zhang, H., James, D., Wang, D., Weierstall, U., Spence, J.C.H., Boutet, S., Messerschmidt, M., Williams, G.J., Gati, C., Yefanov, O.M., White, T.A., Oberthuer, D., Metz, M., Yoon, C.H., Barty, A., Chapman, H.N., Basu, S., Coe, J., Conrad, C.E., Fromme, R., Fromme, P., Tourwe, D., Schiller, P.W., Roth, B.L., Ballet, S., Katritch, V., Stevens, R.C., Cherezov, V., GPCR Network (GPCR)

(2015) Nat Struct Mol Biol 22: 265-268

Released	2015-01-14
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Escherichia coli Homo sapiens synthetic construct
Macromolecule	Soluble cytochrome b562,Delta-type opioid receptor (protein) bifunctional peptide (protein)
Unique Ligands	OLC

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4RWD \| pdb_00004rwd	Download File View File

XFEL structure of the human delta opioid receptor in complex with a bifunctional peptide

Fenalti, G., Zatsepin, N.A., Betti, C., Giguere, P., Han, G.W., Ishchenko, A., Liu, W., Guillemyn, K., Zhang, H., James, D., Wang, D., Weierstall, U., Spence, J.C.H., Boutet, S., Messerschmidt, M., Williams, G.J., Gati, C., Yefanov, O.M., White, T.A., Oberthuer, D., Metz, M., Yoon, C.H., Barty, A., Chapman, H.N., Basu, S., Coe, J., Conrad, C.E., Fromme, R., Fromme, P., Tourwe, D., Schiller, P.W., Roth, B.L., Ballet, S., Katritch, V., Stevens, R.C., Cherezov, V., GPCR Network (GPCR)

(2015) Nat Struct Mol Biol 22: 265-268

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli Homo sapiens synthetic construct
Macromolecule	Soluble cytochrome b562,Delta-type opioid receptor (protein) bifunctional peptide (protein)
Unique Ligands	NA, OLA, OLC

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4Z8K \| pdb_00004z8k	Download File View File

Phycocyanin structure from T. elongatus at 2.5-A from XFEL using a viscous delivery medium for serial femtosecond crystallography

Fromme, R., Basu, S., Fromme, P.

(2015) IUCrJ 2: 421-430

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	CYC

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4ZIX \| pdb_00004zix	Download File View File

Structure of HEWL using Serial Femtosecond Crystallography of Soluble Proteins in Lipidic Cubic Phase

Fromme, R., Ishchenko, A., Metz, M., Roy-Chowdhury, S., Basu, S., Boutet, S., Fromme, P., White, T.A., Barty, A., Spence, J.C.H., Weierstall, U., Liu, W., Cherezov, V.

(2015) IUCrJ 2: 545

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4ZIZ \| pdb_00004ziz	Download File View File

Serial Femtosecond Crystallography of Soluble Proteins in Lipidic Cubic Phase (C-Phycocyanin from T. elongatus)

Fromme, R., Ishchenko, A., Metz, M., Roy-Chowdhury, S., Basu, S., Boutet, S., Fromme, P., White, T.A., Barty, A., Spence, J.C.H., Weierstall, U., Liu, W., Cherezov, V.

(2015) IUCrJ 2: 545-551

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	CYC

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4ZWJ \| pdb_00004zwj	Download File View File

Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser

Kang, Y., Zhou, X.E., Gao, X., He, Y., Liu, W., Ishchenko, A., Barty, A., White, T.A., Yefanov, O., Han, G.W., Xu, Q., de Waal, P.W., Ke, J., Tan, M.H.E., Zhang, C., Moeller, A., West, G.M., Pascal, B., Eps, N.V., Caro, L.N., Vishnivetskiy, S.A., Lee, R.J., Suino-Powell, K.M., Gu, X., Pal, K., Ma, J., Zhi, X., Boutet, S., Williams, G.J., Messerschmidt, M., Gati, C., Zatsepin, N.A., Wang, D., James, D., Basu, S., Roy-Chowdhury, S., Conrad, C., Coe, J., Liu, H., Lisova, S., Kupitz, C., Grotjohann, I., Fromme, R., Jiang, Y., Tan, M., Yang, H., Li, J., Wang, M., Zheng, Z., Li, D., Howe, N., Zhao, Y., Standfuss, J., Diederichs, K., Dong, Y., Potter, C.S., Carragher, B., Caffrey, M., Jiang, H., Chapman, H.N., Spence, J.C.H., Fromme, P., Weierstall, U., Ernst, O.P., Katritch, V., Gurevich, V.V., Griffin, P.R., Hubbell, W.L., Stevens, R.C., Cherezov, V., Melcher, K., Xu, H.E., GPCR Network (GPCR)

(2015) Nature 523: 561-567

Released	2015-07-29
Method	X-RAY DIFFRACTION 3.302 Å
Organisms	Homo sapiens Mus musculus Tequatrovirus T4
Macromolecule	Chimera protein of human Rhodopsin, mouse S-arrestin, and T4 Endolysin (protein)

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5E79 \| pdb_00005e79	Download File View File

Macromolecular diffractive imaging using imperfect crystals

Ayyer, K., Yefanov, O., Oberthur, D., Roy-Chowdhury, S., Galli, L., Mariani, V., Basu, S., Coe, J., Conrad, C.E., Fromme, R., Schaffer, A., Dorner, K., James, D., Kupitz, C., Metz, M., Nelson, G., Xavier, P.L., Beyerlein, K.R., Schmidt, M., Sarrou, I., Spence, J.C.H., Weierstall, U., White, T.A., Yang, J.-H., Zhao, Y., Liang, M., Aquila, A., Hunter, M.S., Koglin, J.E., Boutet, S., Fromme, P., Barty, A., Chapman, H.N.

(2016) Nature 530: 202-206

Released	2017-02-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, MG, OEX, PHO, PL9, SQD

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5E7C \| pdb_00005e7c	Download File View File

Macromolecular diffractive imaging using imperfect crystals - Bragg data

Ayyer, K., Yefanov, O., Oberthuer, D., Roy-Chowdhury, S., Galli, L., Mariani, V., Basu, S., Coe, J., Conrad, C.E., Fromme, R., Schaffner, A., Doerner, K., James, D., Kupitz, C., Metz, M., Nelson, G., Xavier, P.L., Beyerlein, K.R., Schmidt, M., Sarrou, I., Spence, J.C.H., Weierstall, U., White, T.A., Yang, J.-H., Zhao, Y., Liang, M., Aquila, A., Hunter, M.S., Robinson, J.S., Koglin, J.E., Boutet, S., Fromme, P., Barty, A., Chapman, H.N.

(2016) Nature 530: 202-206

Released	2016-02-10
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, MG, OEX, PHO, PL9, SQD

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5TUD \| pdb_00005tud	Download File View File

Structural Insights into the Extracellular Recognition of the Human Serotonin 2B Receptor by an Antibody

Ishchenko, A., Wacker, D., Kapoor, M., Zhang, A., Han, G.W., Basu, S., Boutet, S., James, D., Wang, D., Weierstall, U., Liu, W., Katritch, V., Stevens, R.C., Cherezov, V.

(2017) Proc Natl Acad Sci U S A 114: 8223-8228

Released	2017-07-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli Homo sapiens Mus musculus
Macromolecule	5-hydroxytryptamine receptor 2B,Soluble cytochrome b562 chimera (protein) Anti-5-HT2B Fab heavy chain (protein) Anti-5-HT2B Fab light chain (protein)
Unique Ligands	ERM

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6FMR \| pdb_00006fmr	Download File View File

IMISX-EP of Se-PepTSt

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, PO4

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6FMS \| pdb_00006fms	Download File View File

IMISX-EP of Se-LspA

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-08-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pseudomonas aeruginosa PAO1 synthetic construct
Macromolecule	Globomycin (protein) Lipoprotein signal peptidase (protein)
Unique Ligands	OLC

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6FMT \| pdb_00006fmt	Download File View File

IMISX-EP of Hg-BacA Soaking SAD

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl-diphosphatase (protein)
Unique Ligands	HG, OLC, TRS

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6FMV \| pdb_00006fmv	Download File View File

IMISX-EP of Hg-BacA soaking SIRAS

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl-diphosphatase (protein)
Unique Ligands	FLC, OLC, TRS

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6FMW \| pdb_00006fmw	Download File View File

IMISX-EP of Hg-BacA cocrystallization

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl-diphosphatase (protein)
Unique Ligands	HG, OLC, TRS

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6FMX \| pdb_00006fmx	Download File View File

IMISX-EP of W-PgpB

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Phosphatidylglycerophosphatase B (protein)
Unique Ligands	OLC, WO4

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6FMY \| pdb_00006fmy	Download File View File

IMISX-EP of S-PepTSt

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, PE5, PO4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1K0P | pdb_00001k0p

1NQP | pdb_00001nqp

4FJR | pdb_00004fjr

4KXI | pdb_00004kxi

4NC3 | pdb_00004nc3

4O9R | pdb_00004o9r

4PBU | pdb_00004pbu

4Q70 | pdb_00004q70

4RVY | pdb_00004rvy

4RWA | pdb_00004rwa

4RWD | pdb_00004rwd

4Z8K | pdb_00004z8k

4ZIX | pdb_00004zix

4ZIZ | pdb_00004ziz

4ZWJ | pdb_00004zwj

5E79 | pdb_00005e79

5E7C | pdb_00005e7c

5TUD | pdb_00005tud

6FMR | pdb_00006fmr

6FMS | pdb_00006fms

6FMT | pdb_00006fmt

6FMV | pdb_00006fmv

6FMW | pdb_00006fmw

6FMX | pdb_00006fmx

6FMY | pdb_00006fmy