RCSB PDB: Search

3F9V \| pdb_00003f9v	Download File View File

Crystal Structure Of A Near Full-Length Archaeal MCM: Functional Insights For An AAA+ Hexameric Helicase

Chen, X.J., Brewster, A.S., Wang, G.G., Yu, X., Greenleaf, W., Tjajadi, M., Klein, M.

(2008) Proc Natl Acad Sci U S A 105: 20191-20196

Released	2008-12-30
Method	X-RAY DIFFRACTION 4.35 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Minichromosome maintenance protein MCM (protein)

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4OW3 \| pdb_00004ow3	Download File View File

Thermolysin structure determined by free-electron laser

Hattne, J., Echols, N., Tran, R., Kern, J., Gildea, R.J., Brewster, A.S., Alonso-Mori, R., Glockner, C., Hellmich, J., Laksmono, H., Sierra, R.G., Lassalle-Kaiser, B., Lampe, A., Han, G., Gul, S., DiFiore, D., Milathianaki, D., Fry, A.R., Miahnahri, A., White, W.E., Schafer, D.W., Seibert, M.M., Koglin, J.E., Sokaras, D., Weng, T.-C., Sellberg, J., Latimer, M.J., Glatzel, P., Zwart, P.H., Grosse-Kunstleve, R.W., Bogan, M.J., Messerschmidt, M., Williams, G.J., Boutet, S., Messinger, J., Zouni, A., Yano, J., Bergmann, U., Yachandra, V.K., Adams, P.D., Sauter, N.K.

(2014) Nat Methods 11: 545-548

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	Thermolysin (protein)
Unique Ligands	CA, ZN

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4QX0 \| pdb_00004qx0	Download File View File

Cry3A Toxin structure obtained by Serial Femtosecond Crystallography from in vivo grown crystals isolated from Bacillus thuringiensis and data processed with the cctbx.xfel software suite

Sawaya, M.R., Cascio, D., Gingery, M., Rodriguez, J., Goldschmidt, L., Colletier, J.-P., Messerschmidt, M., Boutet, S., Koglin, J.E., Williams, G.J., Brewster, A.S., Nass, K., Hattne, J., Botha, S., Doak, R.B., Shoeman, R.L., DePonte, D.P., Park, H.-W., Federici, B.A., Sauter, N.K., Schlichting, I., Eisenberg, D.

(2014) Proc Natl Acad Sci U S A 111: 12769-12774

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus thuringiensis serovar tenebrionis
Macromolecule	Pesticidal crystal protein cry3Aa (protein)

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4QX1 \| pdb_00004qx1	Download File View File

Cry3A Toxin structure obtained by Serial Femtosecond Crystallography from in vivo grown crystals isolated from Bacillus thuringiensis and data processed with the CrystFEL software suite

Sawaya, M.R., Cascio, D., Gingery, M., Rodriguez, J., Goldschmidt, L., Colletier, J.-P., Messerschmidt, M., Boutet, S., Koglin, J.E., Williams, G.J., Brewster, A.S., Nass, K., Hattne, J., Botha, S., Doak, R.B., Shoeman, R.L., DePonte, D.P., Park, H.-W., Federici, B.A., Sauter, N.K., Schlichting, I., Eisenberg, D.

(2014) Proc Natl Acad Sci U S A 111: 12769-12774

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus thuringiensis serovar tenebrionis
Macromolecule	Pesticidal crystal protein cry3Aa (protein)

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4QX2 \| pdb_00004qx2	Download File View File

Cry3A Toxin structure obtained by injecting Bacillus thuringiensis cells in an XFEL beam, collecting data by serial femtosecond crystallographic methods and processing data with the cctbx.xfel software suite

Sawaya, M.R., Cascio, D., Gingery, M., Rodriguez, J., Goldschmidt, L., Colletier, J.-P., Messerschmidt, M., Boutet, S., Koglin, J.E., Williams, G.J., Brewster, A.S., Nass, K., Hattne, J., Botha, S., Doak, R.B., Shoeman, R.L., DePonte, D.P., Park, H.-W., Federici, B.A., Sauter, N.K., Schlichting, I., Eisenberg, D.

(2014) Proc Natl Acad Sci U S A 111: 12769-12774

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus thuringiensis serovar tenebrionis
Macromolecule	Pesticidal crystal protein cry3Aa (protein)

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4QX3 \| pdb_00004qx3	Download File View File

Cry3A Toxin structure obtained by injecting Bacillus thuringiensis cells in an XFEL beam, collecting data by serial femtosecond crystallographic methods and processing data with the CrystFEL software suite

Sawaya, M.R., Cascio, D., Gingery, M., Rodriguez, J., Goldschmidt, L., Colletier, J.-P., Messerschmidt, M., Boutet, S., Koglin, J.E., Williams, G.J., Brewster, A.S., Nass, K., Hattne, J., Botha, S., Doak, R.B., Shoeman, R.L., DePonte, D.P., Park, H.-W., Federici, B.A., Sauter, N.K., Schlichting, I., Eisenberg, D.

(2014) Proc Natl Acad Sci U S A 111: 12769-12774

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus thuringiensis serovar tenebrionis
Macromolecule	Pesticidal crystal protein cry3Aa (protein)

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4RIL \| pdb_00004ril	Download File View File

Structure of the amyloid forming segment, GAVVTGVTAVA, from the NAC domain of Parkinson's disease protein alpha-synuclein, residues 68-78, determined by electron diffraction

Rodriguez, J.A., Ivanova, M., Sawaya, M.R., Cascio, D., Reyes, F., Shi, D., Johnson, L., Guenther, E., Sangwan, S., Hattne, J., Nannenga, B., Brewster, A.S., Messerschmidt, M., Boutet, S., Sauter, N.K., Gonen, T., Eisenberg, D.S.

(2015) Nature 525: 486-490

Released	2015-08-26
Method	ELECTRON CRYSTALLOGRAPHY 1.43 Å
Organisms	Homo sapiens
Macromolecule	Alpha-synuclein (protein)

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4S1K \| pdb_00004s1k	Download File View File

Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 100 K

Ginn, H.M., Messerschmidt, M., Ji, X., Zhang, H., Axford, D., Gildea, R.J., Winter, G., Brewster, A.S., Hattne, J., Wagner, A., Grimes, J.M., Evans, G., Sauter, N.K., Sutton, G., Stuart, D.I.

(2015) Nat Commun 6: 6435-6435

Released	2015-03-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Uranotaenia sapphirina cypovirus
Macromolecule	Polyhedrin (protein)
Unique Ligands	ATP, MG

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4S1L \| pdb_00004s1l	Download File View File

Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 298 K

Ginn, H.M., Messerschmidt, M., Ji, X., Zhang, H., Axford, D., Gildea, R.J., Winter, G., Brewster, A.S., Hattne, J., Wagner, A., Grimes, J.M., Evans, G., Sauter, N.K., Sutton, G., Stuart, D.I.

(2015) Nat Commun 6: 6435-6435

Released	2015-03-25
Method	X-RAY DIFFRACTION 1.752 Å
Organisms	Uranotaenia sapphirina cypovirus
Macromolecule	polyhedrin (protein)
Unique Ligands	ATP, MG

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4WG1 \| pdb_00004wg1	Download File View File

Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam - crystFEL)

Coquelle, N., Brewster, A.S., Kapp, U., Shilova, A., Weimhausen, B., Sauter, N.K., Burghammer, M., Colletier, J.P.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1184-1196

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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4WG7 \| pdb_00004wg7	Download File View File

Room-temperature crystal structure of lysozyme determined by serial synchrotron crystallography using a nano focused beam.

Coquelle, N., Brewster, A.S., Kappe, U., Shilova, A., Weinhausen, B., Burghammer, M., Colletier, J.P.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1184-1196

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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4WL7 \| pdb_00004wl7	Download File View File

Room-temperature crystal structure of lysozyme determined by serial synchrotron crystallography using a micro focused beam (Conventional resolution cut-off)

Coquelle, N., Brewster, A.S., Kapp, U., Shilova, A., Weinhausen, B., Burghammer, M., Colletier, J.P.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1184-1196

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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4WMG \| pdb_00004wmg	Download File View File

Structure of hen egg-white lysozyme from a microfludic harvesting device using synchrotron radiation (2.5A)

Lyubimov, A.Y., Murray, T.D., Koehl, A., Uervirojnangkoorn, M., Zeldin, O.B., Cohen, A.E., Soltis, S.M., Baxter, E.M., Brewster, A.S., Sauter, N.K., Brunger, A.T., Berger, J.M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 928-940

Released	2015-04-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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4YUG \| pdb_00004yug	Download File View File

Multiconformer synchrotron model of CypA at 100 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUH \| pdb_00004yuh	Download File View File

Multiconformer synchrotron model of CypA at 150 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUI \| pdb_00004yui	Download File View File

Multiconformer synchrotron model of CypA at 180 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUJ \| pdb_00004yuj	Download File View File

Multiconformer synchrotron model of CypA at 240 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUK \| pdb_00004yuk	Download File View File

Multiconformer synchrotron model of CypA at 260 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUL \| pdb_00004yul	Download File View File

Multiconformer synchrotron model of CypA at 280 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUM \| pdb_00004yum	Download File View File

Multiconformer synchrotron model of CypA at 300 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUN \| pdb_00004yun	Download File View File

Multiconformer synchrotron model of CypA at 310 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUO \| pdb_00004yuo	Download File View File

High-resolution multiconformer synchrotron model of CypA at 273 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-05-20
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUP \| pdb_00004yup	Download File View File

Multiconformer fixed-target X-ray free electron (XFEL) model of CypA at 273 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4ZNN \| pdb_00004znn	Download File View File

MicroED structure of the segment, GVVHGVTTVA, from the A53T familial mutant of Parkinson's disease protein, alpha-synuclein residues 47-56

Rodriguez, J.A., Ivanova, M., Sawaya, M.R., Cascio, D., Reyes, F., Shi, D., Johnson, L., Guenther, E., Sangwan, S., Hattne, J., Nannenga, B., Brewster, A.S., Messerschmidt, M., Boutet, S., Sauter, N.K., Gonen, T., Eisenberg, D.S.

(2015) Nature 525: 486-490

Released	2015-09-09
Method	ELECTRON CRYSTALLOGRAPHY 1.41 Å
Organisms	Homo sapiens
Macromolecule	Alpha-synuclein (protein)

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4ZQX \| pdb_00004zqx	Download File View File

A revised partiality model and post-refinement algorithm for X-ray free-electron laser data

Ginn, H.M., Brewster, A.S., Hattne, J., Evans, G., Wagner, A., Grimes, J., Sauter, N.K., Sutton, G., Stuart, D.I.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1400-1410

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Uranotaenia sapphirina cypovirus
Macromolecule	Polyhedrin (protein)
Unique Ligands	ATP, MG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3F9V | pdb_00003f9v

4OW3 | pdb_00004ow3

4QX0 | pdb_00004qx0

4QX1 | pdb_00004qx1

4QX2 | pdb_00004qx2

4QX3 | pdb_00004qx3

4RIL | pdb_00004ril

4S1K | pdb_00004s1k

4S1L | pdb_00004s1l

4WG1 | pdb_00004wg1

4WG7 | pdb_00004wg7

4WL7 | pdb_00004wl7

4WMG | pdb_00004wmg

4YUG | pdb_00004yug

4YUH | pdb_00004yuh

4YUI | pdb_00004yui

4YUJ | pdb_00004yuj

4YUK | pdb_00004yuk

4YUL | pdb_00004yul

4YUM | pdb_00004yum

4YUN | pdb_00004yun

4YUO | pdb_00004yuo

4YUP | pdb_00004yup

4ZNN | pdb_00004znn

4ZQX | pdb_00004zqx