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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fan, L."

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Search Summary

This query matches 65 Structures.

Refinements

Structure Determination Methodology

experimental (65)

Scientific Name of Source Organism

	Homo sapiens (19)
	Salmonella enterica subsp. enterica serovar Typhimurium (17)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (9)
	Sulfurisphaera tokodaii str. 7 (4)
	Archaeoglobus fulgidus (2)
	Archaeoglobus fulgidus DSM 4304 (2)
	Bos taurus (2)
	Echinophyllia sp. SC22 (2)
	Mus musculus (2)
	Solanum lycopersicum (2)

More...

Taxonomy

	Bacteria (33)
	Eukaryota (23)
	Archaea (12)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (63)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (65)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (21)
	2.0 - 2.5 (6)
	2.5 - 3.0 (15)
	3.0 - 3.5 (9)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (6)
	2010 - 2014 (9)
	2015 - 2019 (20)
	2020 - 2024 (28)

Enzyme Classification Name

	Lyases (26)
	Hydrolases (12)
	Isomerases (11)
	Transferases (5)
	Oxidoreductases (2)

Membrane Protein Annotation

	PDBTM (12)
	MemProtMD (9)
	OPM (9)
	mpstruc (9)

Symmetry Type

	Asymmetric (34)
	Cyclic (30)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (31)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (2)
	All alpha proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 65 Structures

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1PL4 \| pdb_00001pl4	Download File View File

Crystal Structure of human MnSOD Y166F mutant

Fan, L., Tainer, J.A.

(2004) J Biological Chem 279: 5861-5866

Released	2003-12-16
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Mn], mitochondrial (protein)
Unique Ligands	MN

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1PM9 \| pdb_00001pm9	Download File View File

CRYSTAL STRUCTURE OF HUMAN MNSOD H30N, Y166F MUTANT

Fan, L., Tainer, J.A.

(2004) J Biological Chem 279: 5861-5866

Released	2003-12-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Mn], mitochondrial (protein)
Unique Ligands	MN3

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2FWR \| pdb_00002fwr	Download File View File

Structure of Archaeoglobus Fulgidis XPB

Fan, L., Arvai, A.S., Tainer, J.A.

(2006) Mol Cell 22: 27-37

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	DNA repair protein RAD25 (protein)
Unique Ligands	IPA, PO4

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2FZ4 \| pdb_00002fz4	Download File View File

Crystal Structure of the N-terminal half of Archaeoglobus Fulgidus XPB

Fan, L., Tainer, J.A.

(2006) Mol Cell 22: 27-37

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	DNA repair protein RAD25 (protein)

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2FZL \| pdb_00002fzl	Download File View File

Structure of C-terminal domain of Archaeoglobus fulgidus XPB

Fan, L., Arvai, A.S., Tainer, J.A.

(2006) Mol Cell 22: 27-37

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	DNA repair protein RAD25, XPB (protein)
Unique Ligands	IPA

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2G4C \| pdb_00002g4c	Download File View File

Crystal Structure of human DNA polymerase gamma accessory subunit

Fan, L., Farr, C.L., Kaguni, L.S., Tainer, J.A.

(2006) J Mol Biology 358: 1229-1243

Released	2006-04-18
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase gamma subunit 2 (protein)

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3CRV \| pdb_00003crv	Download File View File

XPD_Helicase

Fan, L., Arvai, A.S., Tainer, J.A.

(2008) Cell 133: 789-800

Released	2008-06-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	XPD/Rad3 related DNA helicase (protein)
Unique Ligands	FLC, GOL, IPA, SF4

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3CRW \| pdb_00003crw	Download File View File

XPD_APO

Fan, L., Arvai, A.S., Tainer, J.A.

(2008) Cell 133: 789-800

Released	2008-06-10
Method	X-RAY DIFFRACTION 4 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	XPD/Rad3 related DNA helicase (protein)
Unique Ligands	FC6

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3U34 \| pdb_00003u34	Download File View File

Crystal structure of the general stress FMN/FAD binding protein from the phytopathogen Xanthomonas citri

Hilario, E., Li, Y., Fan, L.

(2012) Acta Crystallogr D Biol Crystallogr 68: 846-853

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Xanthomonas citri
Macromolecule	General stress protein (protein)
Unique Ligands	PGE

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3U35 \| pdb_00003u35	Download File View File

Crystal structure of the general stress FMN/FAD binding protein from the phytopathogen Xanthomonas citri

Hilario, E., Li, Y., Fan, L.

(2012) Acta Crystallogr D Biol Crystallogr 68: 846-853

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xanthomonas citri
Macromolecule	General stress protein (protein)
Unique Ligands	PGE

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4ERN \| pdb_00004ern	Download File View File

Crystal structure of the C-terminal domain of human XPB/ERCC-3 excision repair protein at 1.80 A

Hilario, E., Li, Y., Fan, L.

(2013) Acta Crystallogr D Biol Crystallogr 69: 237-246

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	TFIIH basal transcription factor complex helicase XPB subunit (protein)

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4HN4 \| pdb_00004hn4	Download File View File

Tryptophan synthase in complex with alpha aminoacrylate E(A-A) form and the F9 inhibitor in the alpha site

Hilario, E., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2013) Biochemistry 52: 6396-6411

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, BCN, CS, F9F, PEG

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4HPJ \| pdb_00004hpj	Download File View File

Crystal structure of Tryptophan Synthase at 1.45 A resolution in complex with 2-aminophenol quinonoid in the beta site and the F9 inhibitor in the alpha site

Hilario, E., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2013) Biochemistry 52: 6396-6411

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	1D0, BCN, CL, CS, F9F, PEG

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4HPX \| pdb_00004hpx	Download File View File

Crystal structure of Tryptophan Synthase at 1.65 A resolution in complex with alpha aminoacrylate E(A-A) and benzimidazole in the beta site and the F9 inhibitor in the alpha site

Hilario, E., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2013) Biochemistry 52: 6396-6411

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, BCN, BZI, CS, F9F, PEG

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4HT3 \| pdb_00004ht3	Download File View File

The crystal structure of Salmonella typhimurium Tryptophan Synthase at 1.30A complexed with N-(4'-TRIFLUOROMETHOXYBENZENESULFONYL)-2-AMINO-1-ETHYLPHOSPHATE (F9) inhibitor in the alpha site, internal aldimine

Hilario, E., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2013) Biochemistry 52: 6396-6411

Released	2014-01-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	BCN, CL, CS, EDO, F9F, PEG, PG5, PGE, PLP

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4KKX \| pdb_00004kkx	Download File View File

Crystal structure of Tryptophan Synthase from Salmonella typhimurium with 2-aminophenol quinonoid in the beta site and the F6 inhibitor in the alpha site

Hilario, E., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2013) Biochemistry 52: 6396-6411

Released	2014-01-01
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	AQ3, EDO, F6F, NA, PEG, PGE

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4KSI \| pdb_00004ksi	Download File View File

Crystal Structure Analysis of the Acidic Leucine Aminopeptidase of Tomato

DuPrez, K.T., Scranton, M., Walling, L., Fan, L.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1649-1658

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Solanum lycopersicum
Macromolecule	Leucine aminopeptidase 1, chloroplastic (protein)
Unique Ligands	CL, GOL, IMD, MG, MPD, SO4

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4WUY \| pdb_00004wuy	Download File View File

Crystal Structure of Protein Lysine Methyltransferase SMYD2 in complex with LLY-507, a Cell-Active, Potent and Selective Inhibitor

Nguyen, H., Allali-Hassani, A., Antonysamy, S., Chang, S., Chen, L.H., Curtis, C., Emtage, S., Fan, L., Gheyi, T., Li, F., Liu, S., Martin, J.R., Mendel, D., Olsen, J.B., Pelletier, L., Shatseva, T., Wu, S., Zhang, F.F., Arrowsmith, C.H., Brown, P.J., Campbell, R.M., Garcia, B.A., Barsyte-Lovejoy, D., Mader, M., Vedadi, M.

(2015) J Biological Chem 290: 13641-13653

Released	2015-04-08
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	N-lysine methyltransferase SMYD2 (protein)
Unique Ligands	3UJ, GOL, SAH, ZN

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4WX2 \| pdb_00004wx2	Download File View File

Crystal structure of Tryptophan Synthase from Salmonella typhimurium in complex with two F6F molecules in the alpha-site and one F6F molecule in the beta-site

Hilario, E., Caulkins, B.G., Young, R.P., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2016) Biochim Biophys Acta 1864: 268-279

Released	2015-11-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	EDO, F6F, NA, PEG, PLP

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4XUG \| pdb_00004xug	Download File View File

Crystal structure of Tryptophan Synthase from Salmonella typhimurium in complex with 2-({[4-(Trifluoromethoxy)Phenyl]Sulfonyl}Amino)Ethyl Dihydrogen Phosphate (F9F) inhibitor in the alpha site and ammonium ion in the metal coordination site.

Hilario, E., Caulkins, B.G., Young, R.P., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

To be published

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	EDO, F9F, NH4, PLP

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4Y6G \| pdb_00004y6g	Download File View File

Crystal structure of Tryptophan Synthase from Salmonella typhimurium in complex with N-(4'-trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor in the alpha-site and beta-site.

Hilario, E., Caulkins, B.G., Young, R.P., Dunn, M.F., Mueller, L.J., Fan, L.

(2016) Biochim Biophys Acta 1864: 268-279

Released	2016-02-10
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	F6F, NA, PLP

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4ZQC \| pdb_00004zqc	Download File View File

Tryptophan Synthase from Salmonella typhimurium in complex with two molecules of N-(4'-trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor in the alpha-site and a single F6F molecule in the beta-site at 1.54 Angstrom resolution.

Hilario, E., Caulkins, B.G., Young, R.P., Dunn, M.F., Mueller, L.J., Fan, L.

(2016) Biochim Biophys Acta 1864: 268-279

Released	2016-02-10
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	DMS, F6F, NA, PLP

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5BW6 \| pdb_00005bw6	Download File View File

Tryptophan Synthase from Salmonella typhimurium in complex with a single molecule of 2-({[4-(trifluoromethoxy)phenyl]carbonyl}amino)ethyl dihydrogen phosphate (F6) in the alpha-site.

Hilario, E., Caulkins, B.G., Young, R.P., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2016) Biochim Biophys Acta 1864: 268-279

Released	2016-02-10
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	F6F, NA, PLP

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5CGQ \| pdb_00005cgq	Download File View File

Crystal structure of Tryptophan Synthase from Salmonella typhimurium in complex with F9 ligand in the alpha-site and the product L-Tryptophan in the beta-site.

Hilario, E., Caulkins, B.G., Young, R.P., Dunn, M.F., Mueller, L.J., Fan, L.

To be published

Released	2016-07-13
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	BCN, CS, EDO, F9F, PLP, TRP

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5D8N \| pdb_00005d8n	Download File View File

Tomato leucine aminopeptidase mutant - K354E

DuPrez, K.T., Scranton, M.A., Walling, L.L., Fan, L.

(2016) Acta Crystallogr D Struct Biol 72: 694-702

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Solanum lycopersicum
Macromolecule	Leucine aminopeptidase 1, chloroplastic (protein)
Unique Ligands	ACT, CL, EDO, MG

1 to 25 of 65 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1PL4 | pdb_00001pl4

1PM9 | pdb_00001pm9

2FWR | pdb_00002fwr

2FZ4 | pdb_00002fz4

2FZL | pdb_00002fzl

2G4C | pdb_00002g4c

3CRV | pdb_00003crv

3CRW | pdb_00003crw

3U34 | pdb_00003u34

3U35 | pdb_00003u35

4ERN | pdb_00004ern

4HN4 | pdb_00004hn4

4HPJ | pdb_00004hpj

4HPX | pdb_00004hpx

4HT3 | pdb_00004ht3

4KKX | pdb_00004kkx

4KSI | pdb_00004ksi

4WUY | pdb_00004wuy

4WX2 | pdb_00004wx2

4XUG | pdb_00004xug

4Y6G | pdb_00004y6g

4ZQC | pdb_00004zqc

5BW6 | pdb_00005bw6

5CGQ | pdb_00005cgq

5D8N | pdb_00005d8n