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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Hernandez Gonzalez, J.E."

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Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Pseudomonas putida KT2440 (13)
	Dinoroseobacter shibae DFL 12 = DSM 16493 (7)
	Bradyrhizobium diazoefficiens USDA 110 (5)
	Chloroflexus aggregans DSM 9485 (5)
	Bos taurus (3)
	Homo sapiens (3)
	Mus musculus (2)
	Pseudomonas fluorescens (2)
	Pseudomonas putida (2)
	Arabidopsis thaliana (1)

More...

Taxonomy

	Bacteria (32)
	Eukaryota (9)

Experimental Method

	X-RAY DIFFRACTION (40)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (41)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (16)
	2.0 - 2.5 (7)
	2.5 - 3.0 (11)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (8)
	2015 - 2019 (13)
	2020 - 2024 (20)

Enzyme Classification Name

	Transferases (11)
	Hydrolases (2)

Symmetry Type

	Cyclic (33)
	Asymmetric (8)

SCOP Classification

	Alpha and beta proteins (a+b) (18)
	All beta proteins (5)
	Artifacts (8)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 41 Structures

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3I5R \| pdb_00003i5r	Download File View File

PI3K SH3 domain in complex with a peptide ligand

Batra-Safferling, R., Granzin, J., Modder, S., Hoffmann, S., Willbold, D.

(2010) Biol Chem 391: 33-42

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Peptide ligand (protein) Phosphatidylinositol 3-kinase regulatory subunit alpha (protein)

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3I5S \| pdb_00003i5s	Download File View File

Crystal structure of PI3K SH3

Batra-Safferling, R., Granzin, J., Modder, S., Hoffmann, S., Willbold, D.

(2010) Biol Chem 391: 33-42

Released	2010-03-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein)
Unique Ligands	SO4

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3SW1 \| pdb_00003sw1	Download File View File

Structure of a full-length bacterial LOV protein

Granzin, J., Batra-Safferling, R., Jaeger, K.-E., Drepper, T., Krauss, U.

(2012) J Mol Biology 417: 362-374

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Sensory box protein (protein)
Unique Ligands	FMN

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3UGU \| pdb_00003ugu	Download File View File

Crystal Structure of p44 (Splice Variant of Visual Arrestin)

Batra-Safferling, R., Granzin, J.

(2012) J Mol Biology 416: 611-618

Released	2012-02-08
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bos taurus
Macromolecule	S-arrestin (protein)

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3UGX \| pdb_00003ugx	Download File View File

Crystal Structure of Visual Arrestin

Batra-Safferling, R., Granzin, J.

(2012) J Mol Biology 416: 611-618

Released	2012-02-08
Method	X-RAY DIFFRACTION 2.649 Å
Organisms	Bos taurus
Macromolecule	S-arrestin (protein)
Unique Ligands	EDO, IMD, K, NA, PTD

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4JGG \| pdb_00004jgg	Download File View File

Crystal Structure of TesA

Kovacic, F., Granzin, J., Batra-Safferling, R., Jaeger, K.-E.

(2013) PLoS One 8: e69125-e69125

Released	2013-08-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Esterase TesA (protein)

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4KUK \| pdb_00004kuk	Download File View File

A superfast recovering full-length LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state)

Circolone, F., Granzin, J., Stadler, A., Krauss, U., Drepper, T., Endres, S., Knieps-Gruenhagen, E., Wirtz, A., Willbold, D., Batra-Safferling, R., Jaeger, K.-E.

(2015) BMC Microbiol 15: 30-30

Released	2014-11-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Dinoroseobacter shibae DFL 12 = DSM 16493
Macromolecule	blue-light photoreceptor (protein)
Unique Ligands	ACY, RBF

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4KUO \| pdb_00004kuo	Download File View File

A superfast recovering full-length LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae (Photoexcited state)

Circolone, F., Granzin, J., Stadler, A., Krauss, U., Drepper, T., Endres, S., Knieps-Gruenhagen, E., Wirtz, A., Willbold, D., Batra-Safferling, R., Jaeger, K.-E.

(2015) BMC Microbiol 15: 30-30

Released	2014-11-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dinoroseobacter shibae DFL 12 = DSM 16493
Macromolecule	blue-light photoreceptor (protein)
Unique Ligands	RBF

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4ZRG \| pdb_00004zrg	Download File View File

Visual arrestin mutant - R175E

Granzin, J., Stadler, A., Cousin, A., Schlesinger, R., Batra-Safferling, R.

(2015) Sci Rep 5: 15808-15808

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	S-arrestin (protein)
Unique Ligands	CO2

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5J3W \| pdb_00005j3w	Download File View File

Crystal structures reveal signaling states of a short blue light photoreceptor protein PpSB1-LOV (dark state)

Granzin, J., Batra-Safferling, R.

(2016) J Mol Biology 428: 3721-3736

Released	2016-06-22
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Sensory box protein (protein)
Unique Ligands	FMN

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5J4E \| pdb_00005j4e	Download File View File

Crystal structures reveal signaling states of a short blue light photoreceptor protein PpSB1-LOV (Photoexcited state)

Granzin, J., Batra-Safferling, R.

(2016) J Mol Biology 428: 3721-3736

Released	2016-06-22
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Pseudomonas putida
Macromolecule	Sensory box protein (protein)
Unique Ligands	FMN

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5LTL \| pdb_00005ltl	Download File View File

Structure of human chemokine CCL16

Weiergraeber, O.H., Batra-Safferling, R., Haenel, K., Willbold, D.

To be published

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	C-C motif chemokine 16 (protein)
Unique Ligands	GOL, NA

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5LUV \| pdb_00005luv	Download File View File

Short LOV protein W619_1 in apo-state

Arinkin, V., Granzin, J., Batra-Safferling, R.

(2017) Sci Rep 7: 42971-42971

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas putida W619
Macromolecule	Putative PAS/PAC sensor protein (protein)
Unique Ligands	CL, SO4

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6FXF \| pdb_00006fxf	Download File View File

Crystal structure of the SAM domain of murine SLy1

Kukuk, L.K., Granzin, J., Batra-Safferling, R., Koenig, B.W.

(2019) Sci Rep 9: 54-54

Released	2019-01-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	SAM and SH3 domain-containing protein 3 (protein)

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6G8O \| pdb_00006g8o	Download File View File

Solution structure of the cross-linked SAM domain dimer of murine SLy1

Kukuk, L.K., Dingley, A.J., Koenig, B.W.

(2019) Sci Rep 9: 54-54

Released	2019-01-30
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	SAM and SH3 domain-containing protein 3 (protein)

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6GAY \| pdb_00006gay	Download File View File

A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - M49I mutant

Granzin, J., Batra-Safferling, R., Roellen, K.

(2018) Biochemistry 57: 4833-4847

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Dinoroseobacter shibae DFL 12 = DSM 16493
Macromolecule	Putative blue-light photoreceptor (protein)
Unique Ligands	FMN, SO4

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6GB3 \| pdb_00006gb3	Download File View File

A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - M49S mutant

Granzin, J., Batra-Safferling, R., Roellen, K.

(2018) Biochemistry 57: 4833-4847

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.752 Å
Organisms	Dinoroseobacter shibae DFL 12 = DSM 16493
Macromolecule	Putative blue-light photoreceptor (protein)
Unique Ligands	FMN

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6GBA \| pdb_00006gba	Download File View File

A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - M49A mutant

Granzin, J., Batra-Safferling, R., Roellen, K.

(2018) Biochemistry 57: 4833-4847

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Dinoroseobacter shibae DFL 12 = DSM 16493
Macromolecule	Putative blue-light photoreceptor (protein)
Unique Ligands	FMN

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6GBV \| pdb_00006gbv	Download File View File

A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - M49T mutant

Granzin, J., Batra-Safferling, R., Roellen, K.

(2018) Biochemistry 57: 4833-4847

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Dinoroseobacter shibae DFL 12 = DSM 16493
Macromolecule	Putative blue-light photoreceptor (protein)
Unique Ligands	FMN, PO4

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6GG9 \| pdb_00006gg9	Download File View File

Crystal structures of a short blue light photoreceptor protein PpSB1-LOV mutant (dark state) - R61H/R66I

Roellen, K., Granzin, J., Batra-Safferling, R.

(2018) PLoS One 13: e0200746-e0200746

Released	2018-07-25
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Pseudomonas putida
Macromolecule	Sensory box protein (protein)
Unique Ligands	FMN

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6I8W \| pdb_00006i8w	Download File View File

Crystal structure of a membrane phospholipase A, a novel bacterial virulence factor

Granzin, J., Batra-Safferling, R.

(2022) Elife 11:

Released	2019-11-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Alpha/beta fold hydrolase (protein)
Unique Ligands	11A, BOG, CO2, IPA, MYR

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6YX4 \| pdb_00006yx4	Download File View File

Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148K variant with morpholine

Remeeva, A., Nazarenko, V., Kovalev, K., Gushchin, I.

(2021) J Biological Chem 296: 100662-100662

Released	2021-04-21
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Chloroflexus aggregans DSM 9485
Macromolecule	Multi-sensor hybrid histidine kinase (protein)
Unique Ligands	6LR, FMN, GOL

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6YX6 \| pdb_00006yx6	Download File View File

Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148K variant (no morpholine)

Remeeva, A., Nazarenko, V., Kovalev, K., Gushchin, I.

(2021) J Biological Chem 296: 100662-100662

Released	2021-04-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Chloroflexus aggregans DSM 9485
Macromolecule	Multi-sensor hybrid histidine kinase (protein)
Unique Ligands	FMN, SO4

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6YXB \| pdb_00006yxb	Download File View File

Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148K variant (space group P21)

Remeeva, A., Nazarenko, V., Kovalev, K., Gushchin, I.

(2021) J Biological Chem 296: 100662-100662

Released	2021-04-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Chloroflexus aggregans DSM 9485
Macromolecule	Multi-sensor hybrid histidine kinase (protein)
Unique Ligands	FMN, SO4

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7A6P \| pdb_00007a6p	Download File View File

Structural determinants underlying the adduct lifetime in a short LOV protein PpSB2-LOV

Arinkin, V., Granzin, J., Batra-Safferling, R.

(2021) FEBS J 288: 4955-4972

Released	2021-03-10
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Putative Sensory box protein (protein)
Unique Ligands	FMN, PEG

1 to 25 of 41 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3I5R | pdb_00003i5r

3I5S | pdb_00003i5s

3SW1 | pdb_00003sw1

3UGU | pdb_00003ugu

3UGX | pdb_00003ugx

4JGG | pdb_00004jgg

4KUK | pdb_00004kuk

4KUO | pdb_00004kuo

4ZRG | pdb_00004zrg

5J3W | pdb_00005j3w

5J4E | pdb_00005j4e

5LTL | pdb_00005ltl

5LUV | pdb_00005luv

6FXF | pdb_00006fxf

6G8O | pdb_00006g8o

6GAY | pdb_00006gay

6GB3 | pdb_00006gb3

6GBA | pdb_00006gba

6GBV | pdb_00006gbv

6GG9 | pdb_00006gg9

6I8W | pdb_00006i8w

6YX4 | pdb_00006yx4

6YX6 | pdb_00006yx6

6YXB | pdb_00006yxb

7A6P | pdb_00007a6p