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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kataoka, S."

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Search Summary

This query matches 68 Structures.

Refinements

Structure Determination Methodology

experimental (68)

Scientific Name of Source Organism

	Homo sapiens (41)
	Medicago truncatula (6)
	Escherichia coli (3)
	Mus musculus (3)
	Mycobacterium tuberculosis (3)
	Caenorhabditis elegans (2)
	Escherichia coli K-12 (2)
	Petunia x hybrida (2)
	Pueraria montana var. lobata (2)
	Arabidopsis thaliana (1)

More...

Taxonomy

	Eukaryota (56)
	Bacteria (11)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (62)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (68)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (29)
	2.0 - 2.5 (21)
	2.5 - 3.0 (8)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (5)
	2010 - 2014 (36)
	2015 - 2019 (2)
	2020 - 2024 (20)

Enzyme Classification Name

	Hydrolases (18)
	Transferases (18)
	Oxidoreductases (6)
	Isomerases (4)
	Lyases (6)

Symmetry Type

	Asymmetric (55)
	Cyclic (21)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (14)
	All beta proteins (19)
	Artifacts (12)
	Alpha and beta proteins (a/b) (8)
	All alpha proteins (2)
	Small proteins (1)

AllSelected

1 to 25 of 68 Structures

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1D0Q \| pdb_00001d0q	Download File View File

STRUCTURE OF THE ZINC-BINDING DOMAIN OF BACILLUS STEAROTHERMOPHILUS DNA PRIMASE

Pan, H., Wigley, D.B.

(2000) Structure 8: 231-239

Released	2000-03-29
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA PRIMASE (protein)
Unique Ligands	ZN

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1IJL \| pdb_00001ijl	Download File View File

Crystal structure of acidic phospholipase A2 from deinagkistrodon acutus

Gu, L., Zhang, H., Song, S., Zhou, Y., Lin, Z.

(2002) Acta Crystallogr D Biol Crystallogr 58: 104-110

Released	2001-12-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Deinagkistrodon acutus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA, ZN

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1MZJ \| pdb_00001mzj	Download File View File

Crystal Structure of the Priming beta-Ketosynthase from the R1128 Polyketide Biosynthetic Pathway

Pan, H., Tsai, S.C., Meadows, E.S., Miercke, L.J.W., Keatinge-Clay, A., O'Connell, J., Khosla, C., Stroud, R.M.

Structure 10: 1559-1568

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces sp. R1128
Macromolecule	Beta-ketoacylsynthase III (protein)
Unique Ligands	ACE, COA

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1R3E \| pdb_00001r3e	Download File View File

Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit

Pan, H., Agarwalla, S., Moustakas, D.T., Finer-Moore, J., Stroud, R.M.

(2003) Proc Natl Acad Sci U S A 100: 12648-12653

Released	2003-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	tRNA pseudouridine synthase B (protein) 5'-R(CPUPGPUPGPUP(FHU)PCPGPAPUPCPCPAPCPAPG)-3' (nucleic acid) 5'-R(CPUPGPUPGPUPUPCPGPAPUPCPCPAPCPAPG)-3' (nucleic acid)

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1R3F \| pdb_00001r3f	Download File View File

Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit

Pan, H., Agarwalla, S., Moustakas, D.T., Finer-Moore, J., Stroud, R.M.

(2003) Proc Natl Acad Sci U S A 100: 12648-12653

Released	2003-11-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	tRNA pseudouridine synthase B (protein)

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2AXY \| pdb_00002axy	Download File View File

Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA

Du, Z., Lee, J.K., Tjhen, R.J., Li, S., Stroud, R.M., James, T.L.

(2005) J Biological Chem 280: 38823-38830

Released	2005-09-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Poly(rC)-binding protein 2 (protein) C-rich strand of human telomeric dna (nucleic acid)

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2OLW \| pdb_00002olw	Download File View File

Crystal Structure of E. coli pseudouridine synthase RluE

Pan, H., Ho, J.D., Stroud, R.M., Finer-Moore, J.

(2007) J Mol Biology 367: 1459-1470

Released	2007-03-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Ribosomal large subunit pseudouridine synthase E (protein)
Unique Ligands	ACY, DTT, SO4

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2OML \| pdb_00002oml	Download File View File

crystal structure of E. coli pseudouridine synthase RluE

Pan, H., Ho, J.D., Stroud, R.M., Finer-Moore, J.

(2007) J Mol Biology 367: 1459-1470

Released	2007-03-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Escherichia coli
Macromolecule	Ribosomal large subunit pseudouridine synthase E (protein)
Unique Ligands	SO4

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3HBF \| pdb_00003hbf	Download File View File

Structure of UGT78G1 complexed with myricetin and UDP

Wang, X., Modolo, L., Li, L., Dixon, R.

(2009) J Mol Biology 392: 1292-1302

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Medicago truncatula
Macromolecule	Flavonoid 3-O-glucosyltransferase (protein)
Unique Ligands	MYC, UDP

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3HBJ \| pdb_00003hbj	Download File View File

Structure of UGT78G1 complexed with UDP

Wang, X., Modolo, L., Li, L., Dixon, R.

(2009) J Mol Biology 392: 1292-1302

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Medicago truncatula
Macromolecule	Flavonoid 3-O-glucosyltransferase (protein)
Unique Ligands	UDP

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3IVH \| pdb_00003ivh	Download File View File

Design and Synthesis of Potent BACE-1 Inhibitors with Cellular Activity: Structure-Activity Relationship of P1 Substituents

Pan, H.

(2009) Bioorg Med Chem Lett 19: 6386-6391

Released	2010-01-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	1LI

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3IVI \| pdb_00003ivi	Download File View File

Design and Synthesis of Potent BACE-1 Inhibitors with Cellular Activity: Structure-Activity Relationship of P1 Substituents

Pan, H.

(2009) Bioorg Med Chem Lett 19: 6386-6391

Released	2010-01-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	2LI, GOL, SO4

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3MFE \| pdb_00003mfe	Download File View File

Crystal Structure of Mycobacterium Tuberculosis Proteasome open-gate mutant with H0 movement

Li, D., Li, H.

(2010) EMBO J

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Proteasome subunit alpha (protein) Proteasome subunit beta (protein)

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3MI0 \| pdb_00003mi0	Download File View File

Crystal Structure of Mycobacterium Tuberculosis Proteasome at 2.2 A

Li, D., Li, H.

(2010) EMBO J

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Proteasome subunit alpha (protein) Proteasome subunit beta (protein)
Unique Ligands	DMF, SA6

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3MKA \| pdb_00003mka	Download File View File

Crystal Structure of Mycobacterium Tuberculosis Proteasome with propetide and an T1A mutation at beta-subunit

Li, D., Li, H.

(2010) EMBO J 29: 2037-2047

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Proteasome subunit alpha (protein) Proteasome subunit beta (protein)

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3N4L \| pdb_00003n4l	Download File View File

BACE-1 in complex with ELN380842

Yao, N.H.

(2010) Bioorg Med Chem Lett 20: 4789-4794

Released	2010-11-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	842

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3NSH \| pdb_00003nsh	Download File View File

BACE-1 in complex with ELN475957

Probst, G.D., Bowers, S., Sealy, J.M., Brecht, E., Yao, N.

(2010) Bioorg Med Chem Lett 20: 6034-6039

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	957

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3OXI \| pdb_00003oxi	Download File View File

Design and Synthesis of Disubstituted Thiophene and Thiazole Based Inhibitors of JNK for the Treatment of Neurodegenerative Diseases

Hom, R.K., Bowers, S., Sealy, J., Truong, A., Probst, G.D., Neitzel, M., Neitz, J., Fang, L., Brogley, L., Wu, J., Konradi, A.W., Sham, H., Toth, G., Pan, H., Yao, N., Artis, D.R.

(2010) Bioorg Med Chem Lett 20: 7303-7307

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 10 (protein) Mitogen-activated protein kinase 8 interacting protein 1 (protein)
Unique Ligands	SYY

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3OY1 \| pdb_00003oy1	Download File View File

Highly Selective c-Jun N-Terminal Kinase (JNK) 2 and 3 Inhibitors with In Vitro CNS-like Pharmacokinetic Properties

Probst, G.D., Bowers, S., Sealy, J.M., Truong, A., Neitz, J., Hom, R.K., Galemmo Jr., R.A., Konradi, A.W., Sham, H.L., Quincy, D., Pan, H., Yao, N.

(2011) Bioorg Med Chem Lett 21: 315-319

Released	2011-08-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 10 (protein)
Unique Ligands	589

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3PTG \| pdb_00003ptg	Download File View File

Design and Synthesis of a Novel, Orally Efficacious Tri-substituted Thiophene Based JNK Inhibitor

Bowers, S., Truong, A.P., Neitz, J., Neitzel, M., Probst, G.D., Hom, R.K., Konradi, A.W., Sham, H.L., Toth, G., Pan, H., Yao, N., Artis, D.R., Brigham, E.F., Quinn, K.P., Sauer, J., Powell, K., Ruslim, L., Bard, F., Yednock, T.A., Griswold-Prenner, I.

(2011) Bioorg Med Chem Lett 21: 1838-1843

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	C-Jun-amino-terminal kinase-interacting protein 1 (protein) Mitogen-activated protein kinase 10 (protein)
Unique Ligands	932

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3RTP \| pdb_00003rtp	Download File View File

Design and synthesis of brain penetrant selective JNK inhibitors with improved pharmacokinetic properties for the prevention of neurodegeneration

Bowers, S., Truong, A.P., Neitz, R.J., Hom, R.K., Sealy, J.M., Probst, G.D., Quincy, Q., Peterson, B., Chan, W., Galemmo Jr., R.A., Konradi, A.W., Sham, H.L., Pan, H., Lin, M., Yao, N., Artis, D.R., Zhang, H., Chen, L., Dryer, M., Samant, B., Zmolek, W., Wong, K., Lorentzen, C., Goldbach, E., Tonn, G., Quinn, K.P., Sauer, J., Wright, S., Powell, K., Ruslim, L., Ren, Z., Bard, F., Yednock, T.A., Griswold-Prenne, I.

(2011) Bioorg Med Chem Lett 21: 5521-5527

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 10 (protein)
Unique Ligands	34I

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3TLQ \| pdb_00003tlq	Download File View File

Crystal structure of EAL-like domain protein YdiV

Li, B., Li, N., Wang, F., Guo, L., Liu, C., Zhu, D., Xu, S., Gu, L.

(2012) Nucleic Acids Res 40: 11073-11085

Released	2012-09-12
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Escherichia coli K-12
Macromolecule	Regulatory protein YdiV (protein)
Unique Ligands	GOL, PO4

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4ES4 \| pdb_00004es4	Download File View File

Crystal structure of YdiV and FlhD complex

Li, B., Gu, L.

(2012) Nucleic Acids Res 40: 11073-11085

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Flagellar transcriptional regulator FlhD (protein) Putative cyclic di-GMP regulator CdgR (protein)