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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kondrashkina, E."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Influenza A virus (A/Brevig Mission/1/1918(H1N1)) (4)
	Influenza A virus (3)
	Influenza B virus (B/Lee/1940) (3)
	Influenza A virus (A/New_York/1/18(H1N1)) (2)
	Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6)) (2)
	Influenza B virus (B/Yamanashi/166/1998) (2)
	Aquifex aeolicus (1)
	Influenza A virus (A/chicken/Guangdong/S1312/2010(H6N2)) (1)
	Influenza A virus (A/chicken/Guangdong/S1414/2010(H6N6)) (1)

Taxonomy

	Riboviria (15)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (16)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	2.0 - 2.5 (5)
	2.5 - 3.0 (9)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (10)

Symmetry Type

Cyclic (16)

SCOP Classification

	All beta proteins (14)
	Coiled coil proteins (14)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 16 of 16 Structures

Page 1 of 1

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1ZY2 \| pdb_00001zy2	Download File View File

Crystal structure of the phosphorylated receiver domain of the transcription regulator NtrC1 from Aquifex aeolicus

Doucleff, M., Chen, B., Maris, A.E., Wemmer, D.E., Kondrashkina, E., Nixon, B.T.

(2005) J Mol Biology 353: 242-255

Released	2005-08-16
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Aquifex aeolicus
Macromolecule	transcriptional regulator NtrC1 (protein)
Unique Ligands	MG

Explore in 3D

4M40 \| pdb_00004m40	Download File View File

Crystal structure of hemagglutinin of influenza virus B/Yamanashi/166/1998

Ni, F., Kondrashkina, E., Wang, Q.

(2013) Virology 446: 112-122

Released	2013-09-25
Method	X-RAY DIFFRACTION 3.54 Å
Organisms	Influenza B virus (B/Yamanashi/166/1998)
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

4M44 \| pdb_00004m44	Download File View File

Crystal structure of hemagglutinin of influenza virus B/Yamanashi/166/1998 in complex with avian-like receptor LSTa

Ni, F., Kondrashkina, E., Wang, Q.

(2013) Virology 446: 112-122

Released	2013-09-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Influenza B virus (B/Yamanashi/166/1998)
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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4NRJ \| pdb_00004nrj	Download File View File

Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40

Ni, F., Mbawuike, I.N., Kondrashkina, E., Wang, Q.

(2014) Virology 450-451: 71-83

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Influenza B virus (B/Lee/1940)
Macromolecule	HEMAGGLUTININ HA1 CHAIN (protein) HEMAGGLUTININ HA2 CHAIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

4NRK \| pdb_00004nrk	Download File View File

Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40 complex with LSTc

Ni, F., Mbawuike, I.N., Kondrashkina, E., Wang, Q.

(2014) Virology 450-451: 71-83

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Influenza B virus (B/Lee/1940)
Macromolecule	Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, NAG, SIA

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4NRL \| pdb_00004nrl	Download File View File

Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40

Ni, F., Mbawuike, I.N., Kondrashkina, E., Wang, Q.

(2014) Virology 450-451: 71-83

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Influenza B virus (B/Lee/1940)
Macromolecule	Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BGC, BMA, GAL, NAG, SIA

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5BNY \| pdb_00005bny	Download File View File

Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6)

Ni, F., Kondrashkina, E., Wang, Q.

(2015) PLoS One 7: e0134576-e0134576

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

5BQY \| pdb_00005bqy	Download File View File

Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6) in complex with avian-like receptor LSTa

Ni, F., Kondrashkina, E., Wang, Q.

(2015) PLoS One 7: e0134576-e0134576

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Influenza A virus (A/chicken/Guangdong/S1312/2010(H6N2)) Influenza A virus (A/chicken/Guangdong/S1414/2010(H6N6))
Macromolecule	HEMAGGLUTININ HA1 CHAIN (protein) HEMAGGLUTININ HA2 CHAIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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5BQZ \| pdb_00005bqz	Download File View File

Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6) in complex with human-like receptor LSTc

Ni, F., Kondrashkina, E., Wang, Q.

(2015) PLoS One 10: e0134576-e0134576

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6))
Macromolecule	HEMAGGLUTININ HA1 CHAIN (protein) Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

Explore in 3D

5BR0 \| pdb_00005br0	Download File View File

Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1)

Ni, F., Kondrashkina, E., Wang, Q.

(2015) PLoS One 7: e0134576-e0134576

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Influenza A virus
Macromolecule	HEMAGGLUTININ HA1 CHAIN (protein) HEMAGGLUTININ HA2 CHAIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

5BR3 \| pdb_00005br3	Download File View File

Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1) in complex with LSTa

Ni, F., Kondrashkina, E., Wang, Q.

(2015) PLoS One 7: e0134576-e0134576

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Influenza A virus
Macromolecule	HEMAGGLUTININ HA1 CHAIN (protein) HEMAGGLUTININ HA2 CHAIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG, SIA

Explore in 3D

5BR6 \| pdb_00005br6	Download File View File

Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1) in complex with LSTc

Ni, F., Kondrashkina, E., Wang, Q.

(2015) PLoS One 7: e0134576-e0134576

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Influenza A virus
Macromolecule	HEMAGGLUTININ HA1 CHAIN (protein) HEMAGGLUTININ HA2 CHAIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG, SIA

Explore in 3D

5VMC \| pdb_00005vmc	Download File View File

Influenza hemagglutinin H1 mutant DH1 in complex with 6'SLN

Ni, F., Kondrashkina, E., Wang, Q.

(2017) Virology 513: 98-107

Released	2017-11-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Influenza A virus (A/Brevig Mission/1/1918(H1N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, NAG, SIA

Explore in 3D

5VMF \| pdb_00005vmf	Download File View File

Influenza hemagglutinin H1 mutant DH1D in complex with 6'SLN

Ni, F., Kondrashkina, E., Wang, Q.

(2017) Virology 513: 98-107

Released	2017-11-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Influenza A virus (A/Brevig Mission/1/1918(H1N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, NAG, SIA

Explore in 3D

5VMG \| pdb_00005vmg	Download File View File

Influenza hemagglutinin H1 mutant DH1E in complex with 6'SLN

Ni, F., Kondrashkina, E., Wang, Q.

(2017) Virology 513: 98-107

Released	2017-11-08
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Influenza A virus (A/Brevig Mission/1/1918(H1N1)) Influenza A virus (A/New_York/1/18(H1N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, NAG, SIA

Explore in 3D

5VMJ \| pdb_00005vmj	Download File View File

Influenza hemagglutinin H1 mutant DH1E in complex with 3'SLN

Ni, F., Kondrashkina, E., Wang, Q.

(2017) Virology 513: 98-107

Released	2017-11-08
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Influenza A virus (A/Brevig Mission/1/1918(H1N1)) Influenza A virus (A/New_York/1/18(H1N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, NAG, SIA

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1ZY2 | pdb_00001zy2

Crystal structure of the phosphorylated receiver domain of the transcription regulator NtrC1 from Aquifex aeolicus

4M40 | pdb_00004m40

Crystal structure of hemagglutinin of influenza virus B/Yamanashi/166/1998

4M44 | pdb_00004m44

Crystal structure of hemagglutinin of influenza virus B/Yamanashi/166/1998 in complex with avian-like receptor LSTa

4NRJ | pdb_00004nrj

Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40

4NRK | pdb_00004nrk

Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40 complex with LSTc

4NRL | pdb_00004nrl

Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40

5BNY | pdb_00005bny

Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6)

5BQY | pdb_00005bqy

Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6) in complex with avian-like receptor LSTa

5BQZ | pdb_00005bqz

Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6) in complex with human-like receptor LSTc

5BR0 | pdb_00005br0

Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1)

5BR3 | pdb_00005br3

Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1) in complex with LSTa

5BR6 | pdb_00005br6

Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1) in complex with LSTc

5VMC | pdb_00005vmc

Influenza hemagglutinin H1 mutant DH1 in complex with 6'SLN

5VMF | pdb_00005vmf

Influenza hemagglutinin H1 mutant DH1D in complex with 6'SLN

5VMG | pdb_00005vmg

Influenza hemagglutinin H1 mutant DH1E in complex with 6'SLN

5VMJ | pdb_00005vmj

Influenza hemagglutinin H1 mutant DH1E in complex with 3'SLN

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1ZY2 | pdb_00001zy2

4M40 | pdb_00004m40

4M44 | pdb_00004m44

4NRJ | pdb_00004nrj

4NRK | pdb_00004nrk

4NRL | pdb_00004nrl

5BNY | pdb_00005bny

5BQY | pdb_00005bqy

5BQZ | pdb_00005bqz

5BR0 | pdb_00005br0

5BR3 | pdb_00005br3

5BR6 | pdb_00005br6

5VMC | pdb_00005vmc

5VMF | pdb_00005vmf

5VMG | pdb_00005vmg

5VMJ | pdb_00005vmj