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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kortemme, T."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (4)
	synthetic construct (4)
	Escherichia coli (3)
	Comamonas testosteroni (2)
	Chlamydomonas reinhardtii (1)
	Desulfurococcus mucosus (1)
	Mus musculus (1)
	Rattus norvegicus (1)
	unidentified (1)

Taxonomy

	Eukaryota (6)
	Bacteria (5)
	other sequences (4)
	Archaea (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (12)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (15)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (2)
	2010 - 2014 (2)
	2015 - 2019 (1)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (4)
	Isomerases (2)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (14)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	All alpha proteins (3)
	All beta proteins (1)

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1 to 15 of 15 Structures

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1MOW \| pdb_00001mow	Download File View File

E-DreI

Chevalier, B.S., Kortemme, T., Chadsey, M.S., Baker, D., Monnat Jr., R.J., Stoddard, B.L.

(2002) Mol Cell 10: 895-905

Released	2002-11-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Chlamydomonas reinhardtii Desulfurococcus mucosus
Macromolecule	chimera of homing endonuclease I-DmoI and DNA endonuclease I-CreI (protein) 5'-D(CPCPAPAPAPCPTPGPTPCPTPCPAPAPGPTPTPCPCPGPGPCPG)-3' (nucleic acid) 5'-D(CPGPCPCPGPGPAPAPCPTPTPGPAPGPAPCPAPGPTPTPTPGPG)-3' (nucleic acid)
Unique Ligands	GOL, MG, SO4

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1MPU \| pdb_00001mpu	Download File View File

Crystal Structure of the free human NKG2D immunoreceptor

McFarland, B.J., Kortemme, T., Baker, D., Strong, R.K.

(2003) Structure 11: 411-422

Released	2003-04-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	NKG2-D type II integral membrane protein (protein)
Unique Ligands	PO4

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1PVH \| pdb_00001pvh	Download File View File

Crystal structure of leukemia inhibitory factor in complex with gp130

Boulanger, M.J., Bankovich, A.J., Kortemme, T., Baker, D., Garcia, K.C.

(2003) Mol Cell 12: 577-589

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-6 receptor beta chain (protein) Leukemia inhibitory factor (protein)
Unique Ligands	IOD

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1UJZ \| pdb_00001ujz	Download File View File

Crystal structure of the E7_C/Im7_C complex; a computationally designed interface between the colicin E7 DNase and the Im7 Immunity protein

Kortemme, T., Joachimiak, L.A., Bullock, A.N., Schuler, A.D., Stoddard, B.L., Baker, D.

(2004) Nat Struct Mol Biol 11: 371-379

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Designed Colicin E7 DNase (protein) Designed Colicin E7 immunity protein (protein)

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2ERH \| pdb_00002erh	Download File View File

Crystal Structure of the E7_G/Im7_G complex; a designed interface between the colicin E7 DNAse and the Im7 immunity protein

Joachimiak, L.A., Kortemme, T., Stoddard, B.L., Baker, D.

(2006) J Mol Biology 361: 195-208

Released	2006-07-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Colicin E7 (protein) Colicin E7 immunity protein (protein)

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2II0 \| pdb_00002ii0	Download File View File

Crystal Structure of catalytic domain of Son of sevenless (Rem-Cdc25) in the absence of Ras

Freedman, T.S., Sondermann, H., Friedland, G.D., Kortemme, T., Bar-Sagi, D., Marqusee, S., Kuriyan, J.

(2006) Proc Natl Acad Sci U S A 103: 16692-16697

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Son of sevenless homolog 1 (protein)

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3QBV \| pdb_00003qbv	Download File View File

Structure of designed orthogonal interaction between CDC42 and nucleotide exchange domains of intersectin

Kapp, G.T., Remenyi, A., Lim, W.A., Kortemme, T.

(2012) Proc Natl Acad Sci U S A 109: 5277-5282

Released	2012-02-08
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Cell division control protein 42 homolog (protein) Intersectin-1 (protein)
Unique Ligands	GDP

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4HOP \| pdb_00004hop	Download File View File

Crystal structure of the computationally designed NNOS-Syntrophin complex

Harwood, I.M., Melero, C., Ollikainen, N., Kortemme, T.

(2014) Proc Natl Acad Sci U S A 111: 15426-15431

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Alpha-1-syntrophin (protein) Nitric oxide synthase, brain (protein)

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6OB5 \| pdb_00006ob5	Download File View File

Computationally-designed, modular sense/response system (S3-2D)

Thompson, M.C., Glasgow, A.A., Huang, Y.M., Fraser, J.S., Kortemme, T.

(2019) Science 366: 1024-1028

Released	2019-12-04
Method	X-RAY DIFFRACTION 2.208 Å
Organisms	Escherichia coli unidentified
Macromolecule	Ankyrin Repeat Domain (AR), S3-2D variant (protein) Maltodextrin-binding protein (protein)
Unique Ligands	FPP
Unique branched monosaccharides	GLC

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6UAD \| pdb_00006uad	Download File View File

Ketosteroid isomerase (C. testosteroni) with truncated & designed loop for precise positioning of a catalytic E38

Kundert, K., Thompson, M.C., Liu, L., Fraser, J.S., Kortemme, T.

To be published

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Comamonas testosteroni
Macromolecule	Ketosteroid isomerase with truncated and designed loop (protein)
Unique Ligands	DXC, PO4

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6UAE \| pdb_00006uae	Download File View File

Ketosteroid isomerase (C. testosteroni) with truncated & designed loop for precise positioning of a catalytic E38

Krivacic, C., Kundert, K., Thompson, M.C., Fraser, J.S., Kortemme, T.

To be published

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Comamonas testosteroni
Macromolecule	Ketosteroid isomerase with designed loop (protein)
Unique Ligands	DXC, EQU, SO4

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6VG7 \| pdb_00006vg7	Download File View File

De novo designed Rossmann fold protein ROS2_49223

Pan, X., Zhang, Y., Kelly, M., Kortemme, T.

(2020) Science 369: 1132-1136

Released	2020-08-19
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	De novo designed protein RO2_25 (protein)

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6VGA \| pdb_00006vga	Download File View File

De novo designed Rossmann fold protein ROS2_835

Pan, X., Zhang, Y., Kelly, M., Kortemme, T.

(2020) Science 369: 1132-1136

Released	2020-08-19
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	De novo designed protein RO2_1 (protein)

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6VGB \| pdb_00006vgb	Download File View File

De novo designed Rossmann fold protein ROS2_36830

Pan, X., Zhang, Y., Kelly, M., Kortemme, T.

(2020) Science 369: 1132-1136

Released	2020-08-19
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	De novo designed protein RO2_20 (protein)

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6W90 \| pdb_00006w90	Download File View File

De novo designed NTF2 fold protein NT-9

Thompson, M.C., Pan, X., Liu, L., Fraser, J.S., Kortemme, T.

(2020) Science 369: 1132-1136

Released	2020-08-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	synthetic construct
Macromolecule	NTF2 fold protein loop-helix-loop design NT-9 (protein)
Unique Ligands	3PE

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1MOW | pdb_00001mow

E-DreI

1MPU | pdb_00001mpu

Crystal Structure of the free human NKG2D immunoreceptor

1PVH | pdb_00001pvh

Crystal structure of leukemia inhibitory factor in complex with gp130

1UJZ | pdb_00001ujz

Crystal structure of the E7_C/Im7_C complex; a computationally designed interface between the colicin E7 DNase and the Im7 Immunity protein

2ERH | pdb_00002erh

Crystal Structure of the E7_G/Im7_G complex; a designed interface between the colicin E7 DNAse and the Im7 immunity protein

2II0 | pdb_00002ii0

Crystal Structure of catalytic domain of Son of sevenless (Rem-Cdc25) in the absence of Ras

3QBV | pdb_00003qbv

Structure of designed orthogonal interaction between CDC42 and nucleotide exchange domains of intersectin

4HOP | pdb_00004hop

Crystal structure of the computationally designed NNOS-Syntrophin complex

6OB5 | pdb_00006ob5

Computationally-designed, modular sense/response system (S3-2D)

6UAD | pdb_00006uad

Ketosteroid isomerase (C. testosteroni) with truncated & designed loop for precise positioning of a catalytic E38

6UAE | pdb_00006uae

Ketosteroid isomerase (C. testosteroni) with truncated & designed loop for precise positioning of a catalytic E38

6VG7 | pdb_00006vg7

De novo designed Rossmann fold protein ROS2_49223

6VGA | pdb_00006vga

De novo designed Rossmann fold protein ROS2_835

6VGB | pdb_00006vgb

De novo designed Rossmann fold protein ROS2_36830

6W90 | pdb_00006w90

De novo designed NTF2 fold protein NT-9

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1MOW | pdb_00001mow

1MPU | pdb_00001mpu

1PVH | pdb_00001pvh

1UJZ | pdb_00001ujz

2ERH | pdb_00002erh

2II0 | pdb_00002ii0

3QBV | pdb_00003qbv

4HOP | pdb_00004hop

6OB5 | pdb_00006ob5

6UAD | pdb_00006uad

6UAE | pdb_00006uae

6VG7 | pdb_00006vg7

6VGA | pdb_00006vga

6VGB | pdb_00006vgb

6W90 | pdb_00006w90