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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Krahn, J."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (5)
	synthetic construct (3)
	Thermochaetoides thermophila (2)
	Bacillus subtilis (1)
	Saccharomyces cerevisiae (1)
	Schizosaccharomyces pombe 972h- (1)

Taxonomy

	Eukaryota (9)
	other sequences (3)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (6)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

	Protein (10)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)
	3.5 - 4.0 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (4)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (7)
	Isomerases (2)

Symmetry Type

	Asymmetric (6)
	Cyclic (5)

SCOP Classification

	All alpha proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 10 of 10 Structures

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1O57 \| pdb_00001o57	Download File View File

CRYSTAL STRUCTURE OF THE PURINE OPERON REPRESSOR OF BACILLUS SUBTILIS

Sinha, S.C., Krahn, J., Shin, B.S., Tomchick, D.R., Zalkin, H., Smith, J.L.

(2003) J Bacteriol 185: 4087-4098

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	PUR OPERON REPRESSOR (protein)
Unique Ligands	1PE, 2PE, EPE, P6G, PG4, SO4

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3SZQ \| pdb_00003szq	Download File View File

Structure of an S. pombe APTX/DNA/AMP/Zn complex

Tumbale, P., Krahn, J., Williams, R.S.

(2011) Nat Struct Mol Biol 18: 1189-1195

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.353 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Aprataxin-like protein (protein) 5'-D(CPCPCPTPG)-3' (nucleic acid) 5'-D(TPAPTPCPGPGPAPAPTPCPAPGPGP*G)-3' (nucleic acid)
Unique Ligands	AMP, BME, ZN

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4J5Q \| pdb_00004j5q	Download File View File

TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1, apo structure

Schellenberg, M.J., Appel, C.D., Krahn, J., Williams, R.S.

(2013) EMBO J 32: 1225-1237

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	O-acetyl-ADP-ribose deacetylase 1 (protein)

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4J5R \| pdb_00004j5r	Download File View File

TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 bound to ADP-HPD

Schellenberg, M.J., Appel, C.D., Krahn, J., Williams, R.S.

(2013) EMBO J 32: 1225-1237

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	O-acetyl-ADP-ribose deacetylase 1 (protein)
Unique Ligands	A1R, CL, EDO

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4J5S \| pdb_00004j5s	Download File View File

TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 ADP-ribose complex

Schellenberg, M.J., Appel, C.D., Krahn, J., Williams, R.S.

(2013) EMBO J 32: 1225-1237

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	O-acetyl-ADP-ribose deacetylase 1 (protein)
Unique Ligands	BO4, CL, EDO, SBE, ZZC

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7N3Y \| pdb_00007n3y	Download File View File

Crystal Structure of Saccharomyces cerevisiae Apn2 Catalytic Domain E59Q/D222N Mutant in Complex with DNA

Wojtaszek, J.L., Krahn, J., Wallace, B.D., Williams, R.S.

(2022) Cell Rep 41: 111448-111448

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	DNA-(apurinic or apyrimidinic site) endonuclease 2 (protein) DNA (5'-D(CPCPGPAPAPAPTPTP(PST)P(SC)P(GS)P(GS)P(AS))-3') (nucleic acid) DNA (5'-D(TPCPCPGPAPAPAPTP(PST)P(PST)P(SC)P(GS)P(GS))-3') (nucleic acid)
Unique Ligands	CA, CIT, EDO, TAR, TLA

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7SWL \| pdb_00007swl	Download File View File

CryoEM structure of the N-terminal-deleted Rix7 AAA-ATPase

Kocaman, S., Stanley, R.E., Lo, Y.H., Krahn, J., Dandey, V.P., Sobhany, M., Petrovich, M., Williams, J.G., Deterding, L.J., Borgnia, M.J., Etigunta, S.

(2022) PNAS Nexus 1: pgac118-pgac118

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.88 Å
Organisms	Thermochaetoides thermophila synthetic construct
Macromolecule	Rix7 (protein) polyleucine (protein)
Unique Ligands	ADP, ATP, MG

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7T0V \| pdb_00007t0v	Download File View File

CryoEM structure of the crosslinked Rix7 AAA-ATPase

Kocaman, S., Stanley, R.E., Lo, Y.H., Krahn, J., Dandey, V.P., Sobhany, M., Petrovich, M., Williams, J.G., Deterding, L.J., Borgnia, M.J., Etigunta, S.

(2022) PNAS Nexus 1: pgac118-pgac118

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.67 Å
Organisms	Thermochaetoides thermophila synthetic construct
Macromolecule	Rix7 (protein) polyvaline (protein)
Unique Ligands	ADP, ATP, MG