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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lim, W.A."

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This query matches 20 Structures.

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Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (8)
	Caenorhabditis elegans (4)
	Mus musculus (4)
	Rattus norvegicus (4)
	Homo sapiens (3)
	Lambdavirus lambda (1)

Taxonomy

	Eukaryota (19)
	Duplodnaviria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (18)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (20)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (6)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (7)
	2000 - 2004 (2)
	2005 - 2009 (8)
	2010 - 2014 (2)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (2)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (15)
	Cyclic (5)
	Dihedral (1)

SCOP Classification

	All beta proteins (9)
	Alpha and beta proteins (a+b) (6)
	All alpha proteins (2)
	Artifacts (2)
	Alpha and beta proteins (a/b) (1)

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1 to 20 of 20 Structures

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1B07 \| pdb_00001b07	Download File View File

CRK SH3 DOMAIN COMPLEXED WITH PEPTOID INHIBITOR

Nguyen, J.T., Turck, C.W., Cohen, F.E., Zuckermann, R.N., Lim, W.A.

(1998) Science 282: 2088-2092

Released	1999-01-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (PROTO-ONCOGENE CRK (CRK)) (protein) PROTEIN (SH3 PEPTOID INHIBITOR) (protein)
Unique Ligands	PYJ

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1EVH \| pdb_00001evh	Download File View File

EVH1 DOMAIN FROM MURINE ENABLED IN COMPLEX WITH ACTA PEPTIDE

Prehoda, K.E., Lee, D.J., Lim, W.A.

(1999) Cell 97: 471-480

Released	1999-05-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (MENA EVH1 DOMAIN) (protein) Peptide ACTA (protein)

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1KJW \| pdb_00001kjw	Download File View File

SH3-Guanylate Kinase Module from PSD-95

McGee, A.W., Dakoji, S.R., Olsen, O., Bredt, D.S., Lim, W.A., Prehoda, K.E.

(2001) Mol Cell 8: 1291-1301

Released	2002-01-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	POSTSYNAPTIC DENSITY PROTEIN 95 (protein)
Unique Ligands	SO4

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1LLI \| pdb_00001lli	Download File View File

THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKING

Lim, W.A., Hodel, A., Sauer, R.T., Richards, F.M.

(1994) Proc Natl Acad Sci U S A 91: 423-427

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lambdavirus lambda
Macromolecule	PROTEIN (LAMBDA REPRESSOR) (protein) DNA (5'-D(APAPTPAPCPCPAPCPTPGPGPCPGPGPTPGPA PTPAPT)-3') (nucleic acid) DNA (5'-D(TPAPTPAPTPCPAPCPCPGPCPCPAPGPTPGPG PTPAPT)-3') (nucleic acid)

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1MKE \| pdb_00001mke	Download File View File

Structure of the N-WASP EVH1 Domain-WIP complex

Volkman, B.F., Prehoda, K.E., Scott, J.A., Peterson, F.C., Lim, W.A.

(2002) Cell 111: 565-576

Released	2002-12-04
Method	SOLUTION NMR
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Fusion protein consisting of Wiskott-Aldrich syndrome protein interacting protein (WIP), GSGSG linker, and Neural Wiskott-Aldrich syndrome protein (N-WASP) (protein)

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1QAU \| pdb_00001qau	Download File View File

UNEXPECTED MODES OF PDZ DOMAIN SCAFFOLDING REVEALED BY STRUCTURE OF NNOS-SYNTROPHIN COMPLEX

Hillier, B.J., Christopherson, K.S., Prehoda, K.E., Bredt, D.S., Lim, W.A.

(1999) Science 284: 812-815

Released	1999-05-04
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Rattus norvegicus
Macromolecule	NEURONAL NITRIC OXIDE SYNTHASE (RESIDUES 1-130) (protein)

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1QAV \| pdb_00001qav	Download File View File

Unexpected Modes of PDZ Domain Scaffolding Revealed by Structure of NNOS-Syntrophin Complex

Hillier, B.J., Christopherson, K.S., Prehoda, K.E., Bredt, D.S., Lim, W.A.

(1999) Science 284: 812-815

Released	1999-05-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	ALPHA-1 SYNTROPHIN (RESIDUES 77-171) (protein) NEURONAL NITRIC OXIDE SYNTHASE (RESIDUES 1-130) (protein)

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1SEM \| pdb_00001sem	Download File View File

STRUCTURAL DETERMINANTS OF PEPTIDE-BINDING ORIENTATION AND OF SEQUENCE SPECIFICITY IN SH3 DOMAINS

Lim, W.A., Richards, F.M., Fox, R.O.

(1994) Nature 372: 375-379

Released	1995-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Caenorhabditis elegans Mus musculus
Macromolecule	10-RESIDUE PROLINE-RICH PEPTIDE FROM MSOS (ACE-PRO-PRO-PRO-VAL-PRO-PRO-ARG-ARG-ARG) (protein) SEM-5 (protein)

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1ZL8 \| pdb_00001zl8	Download File View File

NMR structure of L27 heterodimer from C. elegans Lin-7 and H. sapiens Lin-2 scaffold proteins

Petrosky, K.Y., Ou, H.D., Lohr, F., Dotsch, V., Lim, W.A.

(2005) J Biological Chem 280: 38528-38536

Released	2005-09-13
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans Homo sapiens
Macromolecule	LIN-7 (protein) Peripheral plasma membrane protein CASK (protein)

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2B9F \| pdb_00002b9f	Download File View File

Crystal structure of non-phosphorylated Fus3

Remenyi, A., Good, M.C., Bhattacharyya, R.P., Lim, W.A.

(2005) Mol Cell 20: 951-962

Released	2006-01-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Mitogen-activated protein kinase FUS3 (protein)
Unique Ligands	ADP, MG

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2B9H \| pdb_00002b9h	Download File View File

Crystal structure of Fus3 with a docking motif from Ste7

Remenyi, A., Good, M.C., Bhattacharyya, R.P., Lim, W.A.

(2005) Mol Cell 20: 951-962

Released	2006-01-03
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Mitogen-activated protein kinase FUS3 (protein) Serine/threonine-protein kinase STE7 (protein)
Unique Ligands	ADP, MG

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2B9I \| pdb_00002b9i	Download File View File

Crystal structure of Fus3 with a docking motif from Msg5

Remenyi, A., Good, M.C., Bhattacharyya, R.P., Lim, W.A.

(2005) Mol Cell 20: 951-962

Released	2006-01-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Mitogen-activated protein kinase FUS3 (protein) Tyrosine-protein phosphatase MSG5 (protein)
Unique Ligands	ADP, MG

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2B9J \| pdb_00002b9j	Download File View File

Crystal structure of Fus3 with a docking motif from Far1

Remenyi, A., Good, M.C., Bhattacharyya, R.P., Lim, W.A.

(2005) Mol Cell 20: 951-962

Released	2006-01-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cyclin-dependent kinase inhibitor FAR1 (protein) Mitogen-activated protein kinase FUS3 (protein)
Unique Ligands	ADP, MG

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2F9G \| pdb_00002f9g	Download File View File

Crystal structure of Fus3 phosphorylated on Tyr182

Bhattacharyya, R.P., Remenyi, A., Good, M.C., Bashor, C.J., Falick, A.M., Lim, W.A.

(2006) Science 311: 822-826

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Mitogen-activated protein kinase FUS3 (protein)
Unique Ligands	ADP, MG

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2FA2 \| pdb_00002fa2	Download File View File

Crystal structure of Fus3 without a peptide from Ste5

Bhattacharyya, R.P., Remenyi, A., Good, M.C., Bashor, C.J., Falick, A.M., Lim, W.A.

(2006) Science 311: 822-826

Released	2006-03-28
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Mitogen-activated protein kinase FUS3 (protein)
Unique Ligands	SCN

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2SEM \| pdb_00002sem	Download File View File

SEM5 SH3 DOMAIN COMPLEXED WITH PEPTOID INHIBITOR

Nguyen, J.T., Turck, C.W., Cohen, F.E., Zuckermann, R.N., Lim, W.A.

(1998) Science 282: 2088-2092

Released	1999-01-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Caenorhabditis elegans
Macromolecule	PROTEIN (SEX MUSCLE ABNORMAL PROTEIN 5) (protein) PROTEIN (SH3 PEPTOID INHIBITOR) (protein)

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3FZE \| pdb_00003fze	Download File View File

Structure of the 'minimal scaffold' (ms) domain of Ste5 that cocatalyzes Fus3 phosphorylation by Ste7

Good, M.C., Tang, G., Singleton, J., Remenyi, A., Lim, W.A.

(2009) Cell 136: 1085-1097

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein STE5 (protein)

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3QBV \| pdb_00003qbv	Download File View File

Structure of designed orthogonal interaction between CDC42 and nucleotide exchange domains of intersectin

Kapp, G.T., Remenyi, A., Lim, W.A., Kortemme, T.

(2012) Proc Natl Acad Sci U S A 109: 5277-5282

Released	2012-02-08
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Cell division control protein 42 homolog (protein) Intersectin-1 (protein)
Unique Ligands	GDP

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3SEM \| pdb_00003sem	Download File View File

SEM5 SH3 DOMAIN COMPLEXED WITH PEPTOID INHIBITOR

Nguyen, J.T., Turck, C.W., Cohen, F.E., Zuckermann, R.N., Lim, W.A.

(1998) Science 282: 2088-2092

Released	1999-01-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Caenorhabditis elegans
Macromolecule	SEX MUSCLE ABNORMAL PROTEIN 5 (protein) SH3 PEPTOID INHIBITOR (protein)

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4F2H \| pdb_00004f2h	Download File View File

Structure of the minimal Ste5 VWA domain subject to autoinhibition by the Ste5 PH domain

Coyle, S.M., Zalatan, J.G., Lim, W.A.

(2012) Science 337: 1218-1222

Released	2012-08-22
Method	X-RAY DIFFRACTION 3.192 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein STE5 (protein)

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1B07 | pdb_00001b07

CRK SH3 DOMAIN COMPLEXED WITH PEPTOID INHIBITOR

1EVH | pdb_00001evh

EVH1 DOMAIN FROM MURINE ENABLED IN COMPLEX WITH ACTA PEPTIDE

1KJW | pdb_00001kjw

SH3-Guanylate Kinase Module from PSD-95

1LLI | pdb_00001lli

THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKING

1MKE | pdb_00001mke

Structure of the N-WASP EVH1 Domain-WIP complex

1QAU | pdb_00001qau

UNEXPECTED MODES OF PDZ DOMAIN SCAFFOLDING REVEALED BY STRUCTURE OF NNOS-SYNTROPHIN COMPLEX

1QAV | pdb_00001qav

Unexpected Modes of PDZ Domain Scaffolding Revealed by Structure of NNOS-Syntrophin Complex

1SEM | pdb_00001sem

STRUCTURAL DETERMINANTS OF PEPTIDE-BINDING ORIENTATION AND OF SEQUENCE SPECIFICITY IN SH3 DOMAINS

1ZL8 | pdb_00001zl8

NMR structure of L27 heterodimer from C. elegans Lin-7 and H. sapiens Lin-2 scaffold proteins

2B9F | pdb_00002b9f

Crystal structure of non-phosphorylated Fus3

2B9H | pdb_00002b9h

Crystal structure of Fus3 with a docking motif from Ste7

2B9I | pdb_00002b9i

Crystal structure of Fus3 with a docking motif from Msg5

2B9J | pdb_00002b9j

Crystal structure of Fus3 with a docking motif from Far1

2F9G | pdb_00002f9g

Crystal structure of Fus3 phosphorylated on Tyr182

2FA2 | pdb_00002fa2

Crystal structure of Fus3 without a peptide from Ste5

2SEM | pdb_00002sem

SEM5 SH3 DOMAIN COMPLEXED WITH PEPTOID INHIBITOR

3FZE | pdb_00003fze

Structure of the 'minimal scaffold' (ms) domain of Ste5 that cocatalyzes Fus3 phosphorylation by Ste7

3QBV | pdb_00003qbv

Structure of designed orthogonal interaction between CDC42 and nucleotide exchange domains of intersectin

3SEM | pdb_00003sem

SEM5 SH3 DOMAIN COMPLEXED WITH PEPTOID INHIBITOR

4F2H | pdb_00004f2h

Structure of the minimal Ste5 VWA domain subject to autoinhibition by the Ste5 PH domain

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1B07 | pdb_00001b07

1EVH | pdb_00001evh

1KJW | pdb_00001kjw

1LLI | pdb_00001lli

1MKE | pdb_00001mke

1QAU | pdb_00001qau

1QAV | pdb_00001qav

1SEM | pdb_00001sem

1ZL8 | pdb_00001zl8

2B9F | pdb_00002b9f

2B9H | pdb_00002b9h

2B9I | pdb_00002b9i

2B9J | pdb_00002b9j

2F9G | pdb_00002f9g

2FA2 | pdb_00002fa2

2SEM | pdb_00002sem

3FZE | pdb_00003fze

3QBV | pdb_00003qbv

3SEM | pdb_00003sem

4F2H | pdb_00004f2h