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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lo, Y.K."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Escherichia coli BL21(DE3) (6)
	Synechococcus elongatus PCC 7942 = FACHB-805 (4)
	Escherichia coli (3)
	Thermosynechococcus vestitus BP-1 (3)
	Ananas comosus (1)
	Marburg virus - Musoke, Kenya, 1980 (1)
	Morbillivirus sp. (1)

Taxonomy

	Bacteria (16)
	Riboviria (2)
	Eukaryota (1)

Experimental Method

ELECTRON MICROSCOPY (19)

Polymer Entity Type

	Protein (19)
	RNA (2)

Refinement Resolution (Å)

	2.5 - 3.0 (6)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)
	> 4.5 (5)

Release Date

2020 - 2024 (19)

Enzyme Classification Name

	Isomerases (9)
	Oxidoreductases (3)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (3)
	OPM (3)
	PDBTM (3)
	mpstruc (3)

Symmetry Type

	Cyclic (7)
	Dihedral (6)
	Asymmetric (4)
	Helical (2)

SCOP Classification

Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 19 of 19 Structures

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7NHO	Download File View File

Structure of PSII-M

Zabret, J., Bohn, S., Schuller, S.K., Arnolds, O., Chan, A., Tajkhorshid, E., Stoll, R., Engel, B.D., Rudack, T., Schuller, J.M., Nowaczyk, M.M.

(2021) Nat Plants 7: 524-538

Released	2021-05-05
Method	ELECTRON MICROSCOPY 2.66 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 15
Unique Ligands	BCR, BCT, CL, CLA, FE, HEM, LHG, LMG, MN, PHO, PL9

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7NHP	Download File View File

Structure of PSII-I (PSII with Psb27, Psb28, and Psb34)

Zabret, J., Bohn, S., Schuller, S.K., Arnolds, O., Chan, A., Tajkhorshid, E., Stoll, R., Engel, B.D., Rudack, T., Schuller, J.M., Nowaczyk, M.M.

(2021) Nat Plants 7: 524-538

Released	2021-05-05
Method	ELECTRON MICROSCOPY 2.72 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 18
Unique Ligands	BCR, CL, CLA, FE, HEM, LHG, LMG, MN, PHO, PL9

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7NHQ	Download File View File

Structure of PSII-I prime (PSII with Psb28, and Psb34)

Zabret, J., Bohn, S., Schuller, S.K., Arnolds, O., Chan, A., Tajkhorshid, E., Stoll, R., Engel, B.D., Rudack, T., Schuller, J.M., Nowaczyk, M.M.

(2021) Nat Plants 7: 524-538

Released	2021-05-05
Method	ELECTRON MICROSCOPY 2.68 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 17
Unique Ligands	BCR, CL, CLA, FE, HEM, LHG, LMG, MN, PHO, PL9

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7OI3	Download File View File

Cryo-EM structure of the Cetacean morbillivirus nucleoprotein-RNA complex

Zinzula, L., Beck, F., Klumpe, S., Bohn, S., Pfeifer, G., Bollschweiler, D., Nagy, I., Plitzko, J.M., Baumeister, W.

(2021) J Struct Biol 213: 107750-107750

Released	2021-06-23
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Morbillivirus sp.
Macromolecule	Cetacean morbillivirus nucleoprotein (protein) poly-A 6-mer (nucleic acid)

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8AN1	Download File View File

Structure of a first level Sierpinski triangle formed by a citrate synthase

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) Nature 628: 894-900

Released	2024-02-21
Method	ELECTRON MICROSCOPY 3.93 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)

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8BEI	Download File View File

Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) Nature 628: 894-900

Released	2024-02-28
Method	ELECTRON MICROSCOPY 3.06 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)

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8P4M	Download File View File

CryoEM structure of a C7-symmetrical GroEL7-GroES7 cage in presence of ADP-BeFx

Wagner, J., Beck, F., Bracher, A., Caravajal, A.I., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Escherichia coli
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, BEF, K, MG

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8P4N	Download File View File

CryoEM structure of a GroEL7-GroES7 cage with encapsulated disordered substrate MetK in the presence of ADP-BeFx

Wagner, J., Beck, F., Bracher, A., Caravajal, A.I., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, BEF, K, MG

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8P4O	Download File View File

CryoEM structure of a GroEL7-GroES7 cage with encapsulated ordered substrate MetK in the presence of ADP-BeFx

Wagner, J., Beck, F., Bracher, A., Caravajal, A.I., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Escherichia coli
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein) S-adenosylmethionine synthase (protein)
Unique Ligands	ADP, BEF, K, MG

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8P4P	Download File View File

Structure average of GroEL14 complexes found in the cytosol of Escherichia coli overexpressing GroEL obtained by cryo electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 9.6 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein)
Unique Ligands	ADP, ATP, K, MG

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8P4R	Download File View File

In situ structure average of GroEL14-GroES14 complexes in Escherichia coli cytosol obtained by cryo electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 11.9 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ATP, K, MG

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8QXS	Download File View File

CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with wide GroEL7 trans ring conformation

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 3.12 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, BEF, K, MG

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8QXT	Download File View File

CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with narrow GroEL7 trans ring conformation

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, BEF, K, MG

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8QXU	Download File View File

In situ structure average of GroEL14-GroES7 complexes with wide GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, ATP, K, MG

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8QXV	Download File View File

In situ structure average of GroEL14-GroES7 complexes with narrow GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 13.6 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, ATP, K, MG

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8QZP	Download File View File

Structure of the non-mitochondrial citrate synthase from Ananas comosus

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) bioRxiv

Released	2024-07-24
Method	ELECTRON MICROSCOPY 4.15 Å
Organisms	Ananas comosus
Macromolecule	Citrate synthase (protein)

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8RJK	Download File View File

Pseudoatomic model of a second-order Sierpinski triangle formed by the citrate synthase from Synechococcus elongatus

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) Nature 628: 894-900

Released	2024-02-28
Method	ELECTRON MICROSCOPY 5.91 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)

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8RJL	Download File View File

Structure of a first order Sierpinski triangle formed by the H369R mutant of the citrate synthase from Synechococcus elongatus

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) Nature 628: 894-900

Released	2024-02-28
Method	ELECTRON MICROSCOPY 3.34 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)

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9FVD	Download File View File

Cryo-EM structure of single-layered nucleoprotein-RNA helical assembly from Marburg virus, trimeric repeat unit

Zinzula, L., Beck, F., Camasta, M., Bohn, S., Liu, C., Morado, D., Bracher, A., Plitzko, J.M., Baumeister, W.

(2024) Nat Commun 15: 10307-10307

Released	2024-10-09
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Marburg virus - Musoke, Kenya, 1980
Macromolecule	Nucleoprotein (protein) RNA (5'-R(PAPGPAPCPAPCPAPCPAPAPAPAPAPCPAPAPGPA)-3') (nucleic acid)