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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Navarro Poulsen, J.C."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Opitutus terrae PB90-1 (8)
	Bos taurus (2)
	Opitutus terrae (2)
	Actinomyces (1)
	Aspergillus aculeatus (1)
	Camelus dromedarius (1)
	Candidatus Solibacter usitatus (1)
	Candidatus Solibacter usitatus Ellin6076 (1)
	Lactobacillus acidophilus NCFM (1)
	Teredinibacter turnerae T7901 (1)

Taxonomy

	Bacteria (15)
	Eukaryota (4)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (8)
	2.0 - 2.5 (5)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (4)
	2015 - 2019 (13)

Enzyme Classification Name

Hydrolases (7)

Symmetry Type

	Asymmetric (17)
	Cyclic (1)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a/b) (2)

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1 to 18 of 18 Structures

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3C1U \| pdb_00003c1u	Download File View File

D192N mutant of Rhamnogalacturonan acetylesterase

Langkilde, A., Lo Leggio, L., Navarro Poulsen, J.C., Molgaard, A., Larsen, S.

(2008) Acta Crystallogr D Biol Crystallogr 64: 851-863

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Aspergillus aculeatus
Macromolecule	Rhamnogalacturonan acetylesterase (protein)
Unique Ligands	ACT, NAG

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4AA8 \| pdb_00004aa8	Download File View File

Bovine chymosin at 1.8A resolution

Langholm Jensen, J., Molgaard, A., Navarro Poulsen, J.C., van den Brink, J.M., Harboe, M., Simonsen, J.B., Qvist, K.B., Larsen, S.

(2013) Acta Crystallogr D Biol Crystallogr 69: 901-913

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Bos taurus
Macromolecule	CHYMOSIN (protein)
Unique Ligands	CL

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4AA9 \| pdb_00004aa9	Download File View File

Camel chymosin at 1.6A resolution

Langholm Jensen, J., Molgaard, A., Navarro Poulsen, J.C., van den Brink, J.M., Harboe, M., Simonsen, J.B., Qvist, K.B., Larsen, S.

(2013) Acta Crystallogr D Biol Crystallogr 69: 901-913

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Camelus dromedarius
Macromolecule	CHYMOSIN (protein)
Unique Ligands	GOL, NAG, SO4

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4AIE \| pdb_00004aie	Download File View File

Structure of glucan-1,6-alpha-glucosidase from Lactobacillus acidophilus NCFM

Fredslund, F., Navarro Poulsen, J.C., Lo Leggio, L.

(2012) J Bacteriol 194: 4249

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Lactobacillus acidophilus NCFM
Macromolecule	GLUCAN 1,6-ALPHA-GLUCOSIDASE (protein)
Unique Ligands	CA, GOL, MES

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4AUC \| pdb_00004auc	Download File View File

Bovine chymosin in complex with Pepstatin A

Langholm Jensen, J., Navarro Poulsen, J.C., Jacobsen, J., van den Brink, J.M., Qvist, K.B., Larsen, S.

To be published

Released	2013-05-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Actinomyces Bos taurus
Macromolecule	CHYMOSIN (protein) PEPSTATIN A (protein)
Unique Ligands	CD, EDO, NA

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6GRW \| pdb_00006grw	Download File View File

Glucuronoyl Esterase from Opitutus terrae (Au derivative)

Lo Leggio, L., Larsbrink, J., Meland Knudsen, R., Mazurkewich, S., Navarro Poulsen, J.C.

(2018) Biotechnol Biofuels 11: 213-213

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	Putative acetyl xylan esterase (protein)
Unique Ligands	AU, CA, EDO, MG, MPD

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6GRY \| pdb_00006gry	Download File View File

Glucuronoyl Esterase from Solibacter usitatus.

Lo Leggio, L., Larsbrink, J., Meland Knudsen, R., Mazurkewich, S., Navarro Poulsen, J.C.

(2018) Biotechnol Biofuels 11: 213-213

Released	2018-08-15
Method	X-RAY DIFFRACTION 2.00033771874 Å
Organisms	Candidatus Solibacter usitatus
Macromolecule	Putative acetyl xylan esterase (protein)
Unique Ligands	EDO, PEG, PG4, PGE

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6GS0 \| pdb_00006gs0	Download File View File

Native Glucuronoyl Esterase from Opitutus terrae

Lo Leggio, L., Larsbrink, J., Meland Knudsen, R., Mazurkewich, S., Navarro Poulsen, J.C.

(2018) Biotechnol Biofuels 11: 213-213

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	Putative acetyl xylan esterase (protein)
Unique Ligands	EDO, MG, PGE, SO4

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6GU8 \| pdb_00006gu8	Download File View File

Glucuronoyl Esterase from Solibacter usitatus

Lo Leggio, L., Larsbrink, J., Meland Knudsen, R., Mazurkewich, S., Navarro Poulsen, J.C.

(2018) Biotechnol Biofuels 11: 213-213

Released	2018-08-15
Method	X-RAY DIFFRACTION 2.01807823457 Å
Organisms	Candidatus Solibacter usitatus Ellin6076
Macromolecule	Putative acetyl xylan esterase (protein)
Unique Ligands	EDO, PEG

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6HSW \| pdb_00006hsw	Download File View File

A CE15 glucuronoyl esterase from Teredinibacter turnerae T7901

Mazurkewich, S., Lo Leggio, L., Navarro Poulsen, J.C., Larsbrink, J.

(2019) J Biological Chem 294: 6635-6644

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.14734381231 Å
Organisms	Teredinibacter turnerae T7901
Macromolecule	Carbohydrate esterase family 15 domain protein (protein)
Unique Ligands	1PE, BR, EDO, GOL, PEG

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6SYR \| pdb_00006syr	Download File View File

The wild type glucuronoyl esterase OtCE15A from Opitutus terrae in complex with D-glucuronate

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	EDO, GCU, MG, NA

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6SYU \| pdb_00006syu	Download File View File

The wild type glucuronoyl esterase OtCE15A from Opitutus terrae in complex with xylobiose

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Opitutus terrae
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	EDO, MG, PG4
Unique branched monosaccharides	XYP

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6SYV \| pdb_00006syv	Download File View File

The glucuronoyl esterase OtCE15A S267A variant from Opitutus terrae in complex with D-glucuronate

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	BDP, EDO, GCU, MG, PEG

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6SZ0 \| pdb_00006sz0	Download File View File

The glucuronoyl esterase OtCE15A H408A variant from Opitutus terrae

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	EDO, GOL, MG, PEG, SO4

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6SZ4 \| pdb_00006sz4	Download File View File

The glucuronoyl esterase OtCE15A H408A variant from Opitutus terrae in complex with, and covalently linked to, D-glucuronate

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	BDP, FMT

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6SZO \| pdb_00006szo	Download File View File

The glucuronoyl esterase OtCE15A S267A variant from Opitutus terrae in complex with D-galacturonate

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	DMS, EDO, GTR, MG, PEG, PGE

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6T0E \| pdb_00006t0e	Download File View File

The glucuronoyl esterase OtCE15A S267A variant from Opitutus terrae in complex with benzyl D-glucuronoate and D-glucuronate

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	CL, DMS, EDO, GCU, M55, MG, PEG, PG4, PGE, TMO

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6T0I \| pdb_00006t0i	Download File View File

The wild type glucuronoyl esterase OtCE15A from Opitutus terrae in complex with the aldotetrauronic acid XUX

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Opitutus terrae
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	EDO, K, MG, PEG
Unique branched monosaccharides	GCV, XYP

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3C1U | pdb_00003c1u

D192N mutant of Rhamnogalacturonan acetylesterase

4AA8 | pdb_00004aa8

Bovine chymosin at 1.8A resolution

4AA9 | pdb_00004aa9

Camel chymosin at 1.6A resolution

4AIE | pdb_00004aie

Structure of glucan-1,6-alpha-glucosidase from Lactobacillus acidophilus NCFM

4AUC | pdb_00004auc

Bovine chymosin in complex with Pepstatin A

6GRW | pdb_00006grw

Glucuronoyl Esterase from Opitutus terrae (Au derivative)

6GRY | pdb_00006gry

Glucuronoyl Esterase from Solibacter usitatus.

6GS0 | pdb_00006gs0

Native Glucuronoyl Esterase from Opitutus terrae

6GU8 | pdb_00006gu8

Glucuronoyl Esterase from Solibacter usitatus

6HSW | pdb_00006hsw

A CE15 glucuronoyl esterase from Teredinibacter turnerae T7901

6SYR | pdb_00006syr

The wild type glucuronoyl esterase OtCE15A from Opitutus terrae in complex with D-glucuronate

6SYU | pdb_00006syu

The wild type glucuronoyl esterase OtCE15A from Opitutus terrae in complex with xylobiose

6SYV | pdb_00006syv

The glucuronoyl esterase OtCE15A S267A variant from Opitutus terrae in complex with D-glucuronate

6SZ0 | pdb_00006sz0

The glucuronoyl esterase OtCE15A H408A variant from Opitutus terrae

6SZ4 | pdb_00006sz4

The glucuronoyl esterase OtCE15A H408A variant from Opitutus terrae in complex with, and covalently linked to, D-glucuronate

6SZO | pdb_00006szo

The glucuronoyl esterase OtCE15A S267A variant from Opitutus terrae in complex with D-galacturonate

6T0E | pdb_00006t0e

The glucuronoyl esterase OtCE15A S267A variant from Opitutus terrae in complex with benzyl D-glucuronoate and D-glucuronate

6T0I | pdb_00006t0i

The wild type glucuronoyl esterase OtCE15A from Opitutus terrae in complex with the aldotetrauronic acid XUX

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3C1U | pdb_00003c1u

4AA8 | pdb_00004aa8

4AA9 | pdb_00004aa9

4AIE | pdb_00004aie

4AUC | pdb_00004auc

6GRW | pdb_00006grw

6GRY | pdb_00006gry

6GS0 | pdb_00006gs0

6GU8 | pdb_00006gu8

6HSW | pdb_00006hsw

6SYR | pdb_00006syr

6SYU | pdb_00006syu

6SYV | pdb_00006syv

6SZ0 | pdb_00006sz0

6SZ4 | pdb_00006sz4

6SZO | pdb_00006szo

6T0E | pdb_00006t0e

6T0I | pdb_00006t0i