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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pinko, C."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Enterococcus faecalis (4)
	Homo sapiens (3)
	Enterococcus faecalis V583 (2)
	Haemophilus influenzae (1)

Taxonomy

	Bacteria (7)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (5)
	2010 - 2014 (2)

Enzyme Classification Name

	Ligases (7)
	Transferases (3)

Symmetry Type

	Asymmetric (9)
	Cyclic (2)

SCOP Classification

Alpha and beta proteins (a+b) (8)

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1 to 10 of 10 Structures

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1TA8 \| pdb_00001ta8	Download File View File

Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal

Gajiwala, K.S., Pinko, C.

(2004) Structure 12: 1449-1459

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecalis V583
Macromolecule	DNA ligase, NAD-dependent (protein)
Unique Ligands	GOL, NMN, SO4

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1TAE \| pdb_00001tae	Download File View File

Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal

Gajiwala, K.S., Pinko, C.

(2004) Structure 12: 1449-1459

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterococcus faecalis V583
Macromolecule	DNA ligase, NAD-dependent (protein)
Unique Ligands	NA, NAD, SO4

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1VR2 \| pdb_00001vr2	Download File View File

HUMAN VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 (KDR) KINASE DOMAIN

Mctigue, M., Wickersham, J., Pinko, C., Showalter, R., Parast, C., Tempczyk-Russell, A., Gehring, M., Mroczkowski, B., Kan, C., Villafranca, J., Appelt, K.

(1999) Structure 7: 319-330

Released	2000-03-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR KINASE) (protein)

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2XIR \| pdb_00002xir	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with PF- 00337210 (N,2-dimethyl-6-(7-(2-morpholinoethoxy)quinolin-4-yloxy) benzofuran-3-carboxamide)

McTigue, M., Wickersham, J., Pinko, C., Hong, Y., Marrone, T.

To be published

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 (protein)
Unique Ligands	00J

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3BA8 \| pdb_00003ba8	Download File View File

Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase

Pinko, C.

To be published

Released	2008-11-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterococcus faecalis
Macromolecule	DNA ligase (protein)
Unique Ligands	3B8, NMN, SO4

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3BA9 \| pdb_00003ba9	Download File View File

Structural Basis for Inhbition of NAD-Dependent Ligase

Pinko, C.

To be published

Released	2008-11-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterococcus faecalis
Macromolecule	DNA ligase (protein)
Unique Ligands	3B9, GOL, NMN, SO4

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3BAA \| pdb_00003baa	Download File View File

Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase

Pinko, C.

To be published

Released	2008-11-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterococcus faecalis
Macromolecule	DNA ligase (protein)
Unique Ligands	3BA, GOL, NMN, SO4

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3BAB \| pdb_00003bab	Download File View File

Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase

Pinko, C.

To be published

Released	2008-11-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterococcus faecalis
Macromolecule	DNA ligase (protein)
Unique Ligands	3BD, GOL, NMN, SO4

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3BAC \| pdb_00003bac	Download File View File

Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase

Pinko, C.

To be published

Released	2008-11-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Haemophilus influenzae
Macromolecule	DNA ligase (protein)
Unique Ligands	3B9, PO4

Explore in 3D

4AG8 \| pdb_00004ag8	Download File View File

CRYSTAL STRUCTURE OF THE VEGFR2 KINASE DOMAIN IN COMPLEX WITH AXITINIB (AG-013736) (N-Methyl-2-(3-((E)-2-pyridin-2-yl-vinyl)-1H- indazol-6-ylsulfanyl)-benzamide)

McTigue, M., Wickersham, J., Pinko, C., Kania, R.S., Bender, S.

(2012) Proc Natl Acad Sci U S A 109: 18281

Released	2012-09-26
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 (protein)
Unique Ligands	AXI

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1TA8 | pdb_00001ta8

Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal

1TAE | pdb_00001tae

Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal

1VR2 | pdb_00001vr2

HUMAN VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 (KDR) KINASE DOMAIN

2XIR | pdb_00002xir

Crystal structure of the VEGFR2 kinase domain in complex with PF- 00337210 (N,2-dimethyl-6-(7-(2-morpholinoethoxy)quinolin-4-yloxy) benzofuran-3-carboxamide)

3BA8 | pdb_00003ba8

Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase

3BA9 | pdb_00003ba9

Structural Basis for Inhbition of NAD-Dependent Ligase

3BAA | pdb_00003baa

Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase

3BAB | pdb_00003bab

Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase

3BAC | pdb_00003bac

Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase

4AG8 | pdb_00004ag8

CRYSTAL STRUCTURE OF THE VEGFR2 KINASE DOMAIN IN COMPLEX WITH AXITINIB (AG-013736) (N-Methyl-2-(3-((E)-2-pyridin-2-yl-vinyl)-1H- indazol-6-ylsulfanyl)-benzamide)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1TA8 | pdb_00001ta8

1TAE | pdb_00001tae

1VR2 | pdb_00001vr2

2XIR | pdb_00002xir

3BA8 | pdb_00003ba8

3BA9 | pdb_00003ba9

3BAA | pdb_00003baa

3BAB | pdb_00003bab

3BAC | pdb_00003bac

4AG8 | pdb_00004ag8