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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Terrapon, N."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Bacteroides thetaiotaomicron VPI-5482 (7)
	Bacteroides cellulosilyticus DSM 14838 (3)
	Bacteroides intestinalis DSM 17393 (1)
	Bacteroides ovatus (1)
	Bacteroides thetaiotaomicron (1)

Taxonomy

Bacteria (13)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (5)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)

Release Date

	2015 - 2019 (11)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (6)

Symmetry Type

Asymmetric (13)

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1 to 13 of 13 Structures

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4UFC \| pdb_00004ufc	Download File View File

Crystal structure of the GH95 enzyme BACOVA_03438

Rogowski, A., Briggs, J.A., Mortimer, J.C., Tryfona, T., Terrapon, N., Lowe, E.C., Basle, A., Morland, C., Day, A.M., Zheng, H., Rogers, T.E., Thompson, P., Hawkins, A.R., Yadav, M.P., Henrissat, B., Martens, E.C., Dupree, P., Gilbert, H.J., Bolam, D.N.

(2015) Nat Commun 6: 7481

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Bacteroides ovatus
Macromolecule	GH95 (protein)
Unique Ligands	CA, CAC, GIV

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5G2T \| pdb_00005g2t	Download File View File

BT1596 in complex with its substrate 4,5 unsaturated uronic acid alpha 1,4 D-Glucosamine-2-N, 6-O-disulfate

Cartmell, A., Lowe, E.C., Basle, A., Crouch, L.I., Czjzek, M., Turnbull, J., Henrissat, B., Terrapon, N., Thomas, S., Murray, H., Firbank, S.J., Bolam, D.N.

(2017) Proc Natl Acad Sci U S A 114: 7037-7042

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	2-O GLYCOSAMINOGLYCAN SULFATASE (protein)
Unique Ligands	CL, EDO, UAP, ZN
Unique branched monosaccharides	SGN, UAP

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5G2U \| pdb_00005g2u	Download File View File

Structure of BT1596,a 2-O GAG sulfatase

Cartmell, A., Lowe, E.C., Basle, A., Crouch, L.I., Czjzek, M., Turnbull, J., Henrissat, B., Terrapon, N., Thomas, S., Murray, H., Firbank, S.J., Bolam, D.N.

(2017) Proc Natl Acad Sci U S A 114: 7037-7042

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	2-O GLYCOSAMINOGLYCAN SULFATASE (protein)
Unique Ligands	CIT, ZN

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5G2V \| pdb_00005g2v	Download File View File

Structure of BT4656 in complex with its substrate D-Glucosamine-2-N, 6-O-disulfate.

Cartmell, A., Lowe, E.C., Basle, A., Crouch, L.I., Czjzek, M., Turnbull, J., Henrissat, B., Terrapon, N., Thomas, S., Murray, H., Firbank, S.J., Bolam, D.N.

(2017) Proc Natl Acad Sci U S A 114: 7037-7042

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	N-ACETYLGLUCOSAMINE-6-SULFATASE (protein)
Unique Ligands	CA, NO3, SGN

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5MUK \| pdb_00005muk	Download File View File

Glycoside Hydrolase BT3686

Munoz-Munoz, J., Cartmell, A., Terrapon, N., Henrissat, B., Gilbert, H.J.

(2017) Proc Natl Acad Sci U S A 114: 4936-4941

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Neuraminidase (protein)

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5MUL \| pdb_00005mul	Download File View File

Glycoside Hydrolase BT3686 bound to Glucuronic Acid

Munoz-Munoz, J., Cartmell, A., Terrapon, N., Henrissat, B., Gilbert, H.J.

(2017) Proc Natl Acad Sci U S A 114: 4936-4941

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Neuraminidase (protein)
Unique Ligands	BDP

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5MUM \| pdb_00005mum	Download File View File

Glycoside Hydrolase BACINT_00347

Munoz-Munoz, J., Cartmell, A., Terrapon, N., Henrissat, B., Gilbert, H.J.

(2017) Proc Natl Acad Sci U S A 114: 4936-4941

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacteroides intestinalis DSM 17393
Macromolecule	BACINT_00347 (protein)
Unique Ligands	1PE, EDO

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5MVH \| pdb_00005mvh	Download File View File

Glycoside Hydrolase BACCELL_00856

Munoz-Munoz, J., Cartmell, A., Terrapon, N., Henrissat, B., Gilbert, H.J.

(2017) Proc Natl Acad Sci U S A 114: 4936-4941

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacteroides cellulosilyticus DSM 14838
Macromolecule	BACCELL_00856 (protein)

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5NO8 \| pdb_00005no8	Download File View File

Polysaccharide Lyase BACCELL_00875

Cartmell, A., Munoz-Munoz, J., Terrapon, N., Basle, A., Henrissat, B., Gilbert, H.J.

(2017) J Biological Chem 292: 13271-13283

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacteroides cellulosilyticus DSM 14838
Macromolecule	BACCELL_00875 (protein)
Unique Ligands	GOL

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5NOA \| pdb_00005noa	Download File View File

Polysaccharide Lyase BACCELL_00875

Cartmell, A., Munoz-Munoz, J., Terrapon, N., Basle, A., Henrissat, B., Gilbert, H.J.

(2017) J Biological Chem 292: 13271-13283

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	Family 88 glycosyl hydrolase (protein)

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5NOK \| pdb_00005nok	Download File View File

Polysaccharide Lyase BACCELL_00875

Cartmell, A., Munoz-Munoz, J., Terrapon, N., Basle, A., Henrissat, B., Gilbert, H.J.

(2017) J Biological Chem 292: 13271-13283

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Bacteroides cellulosilyticus DSM 14838
Macromolecule	BACCELL_00875 (protein)
Unique Ligands	MES

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6S20 \| pdb_00006s20	Download File View File

Metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (BT33336S-sulf)

Ndeh, D., Basle, A., Strahl, H., Henrissat, B., Terrapon, N., Cartmell, A.

(2020) Nat Commun 11: 646-646

Released	2020-02-05
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	N-acetylgalactosamine-6-O-sulfatase (protein)
Unique Ligands	CA, NG6, PGE

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6S21 \| pdb_00006s21	Download File View File

Metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (BT33494S-sulf)

Ndeh, D., Basle, A., Strahl, H., Henrissat, B., Terrapon, N., Cartmell, A.

(2020) Nat Commun 11: 646-646

Released	2020-02-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Endo-4-O-sulfatase (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, BDP, GCD

1 to 13 of 13 Structures

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4UFC | pdb_00004ufc

Crystal structure of the GH95 enzyme BACOVA_03438

5G2T | pdb_00005g2t

BT1596 in complex with its substrate 4,5 unsaturated uronic acid alpha 1,4 D-Glucosamine-2-N, 6-O-disulfate

5G2U | pdb_00005g2u

Structure of BT1596,a 2-O GAG sulfatase

5G2V | pdb_00005g2v

Structure of BT4656 in complex with its substrate D-Glucosamine-2-N, 6-O-disulfate.

5MUK | pdb_00005muk

Glycoside Hydrolase BT3686

5MUL | pdb_00005mul

Glycoside Hydrolase BT3686 bound to Glucuronic Acid

5MUM | pdb_00005mum

Glycoside Hydrolase BACINT_00347

5MVH | pdb_00005mvh

Glycoside Hydrolase BACCELL_00856

5NO8 | pdb_00005no8

Polysaccharide Lyase BACCELL_00875

5NOA | pdb_00005noa

Polysaccharide Lyase BACCELL_00875

5NOK | pdb_00005nok

Polysaccharide Lyase BACCELL_00875

6S20 | pdb_00006s20

Metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (BT33336S-sulf)

6S21 | pdb_00006s21

Metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (BT33494S-sulf)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

4UFC | pdb_00004ufc

5G2T | pdb_00005g2t

5G2U | pdb_00005g2u

5G2V | pdb_00005g2v

5MUK | pdb_00005muk

5MUL | pdb_00005mul

5MUM | pdb_00005mum

5MVH | pdb_00005mvh

5NO8 | pdb_00005no8

5NOA | pdb_00005noa

5NOK | pdb_00005nok

6S20 | pdb_00006s20

6S21 | pdb_00006s21