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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tong, Y."

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Search Summary

This query matches 115 Structures.

Refinements

Structure Determination Methodology

experimental (115)

Scientific Name of Source Organism

	Homo sapiens (105)
	Rattus norvegicus (2)
	Saccharomyces cerevisiae S288C (2)
	Equus caballus (1)
	Gordonia phage Archimedes (1)
	Lymnaea stagnalis (1)
	Manduca sexta (1)
	Saccharolobus shibatae (1)
	Saccharomyces cerevisiae (1)
	Selaginella moellendorffii (1)

More...

Taxonomy

	Eukaryota (111)
	Archaea (1)
	Bacteria (1)
	Duplodnaviria (1)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (110)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (115)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (33)
	2.0 - 2.5 (44)
	2.5 - 3.0 (22)
	3.0 - 3.5 (5)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (41)
	2010 - 2014 (43)
	2015 - 2019 (22)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (28)
	Hydrolases (20)
	Ligases (11)
	Isomerases (2)
	Lyases (1)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (82)
	Cyclic (32)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a/b) (15)
	Alpha and beta proteins (a+b) (18)
	Artifacts (13)
	All beta proteins (12)
	All alpha proteins (7)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 115 Structures

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1K9O \| pdb_00001k9o	Download File View File

CRYSTAL STRUCTURE OF MICHAELIS SERPIN-TRYPSIN COMPLEX

Ye, S., Cech, A.L., Belmares, R., Bergstrom, R.C., Tong, Y., Corey, D.R., Kanost, M.R., Goldsmith, E.J.

(2001) Nat Struct Biol 8: 979-983

Released	2001-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Manduca sexta Rattus norvegicus
Macromolecule	ALASERPIN (protein) TRYPSIN II ANIONIC (protein)

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1M60 \| pdb_00001m60	Download File View File

Solution Structure of Zinc-substituted cytochrome c

Qian, C., Yao, Y., Tong, Y., Wang, J., Tang, W.

(2003) J Biol Inorg Chem 8: 394-400

Released	2002-08-07
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	Zinc-substituted cytochrome c (protein)
Unique Ligands	HES

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1NI1 \| pdb_00001ni1	Download File View File

Imidazole and cyanophenyl farnesyl transferase inhibitors

Tong, Y., Lin, N.H., Wang, L., Hasvold, L., Wang, W., Leonard, N., Li, T., Li, Q., Cohen, J., Gu, W.Z., Zhang, H., Stoll, V., Bauch, J., Marsh, K., Rosenberg, S.H., Sham, H.L.

(2003) Bioorg Med Chem Lett 13: 1571-1574

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	Protein farnesyltransferase alpha subunit (protein) Protein farnesyltransferase beta subunit (protein)
Unique Ligands	2C5, HFP, ZN

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1NMI \| pdb_00001nmi	Download File View File

Solution structure of the imidazole complex of iso-1 cytochrome c

Yao, Y., Tong, Y., Liu, G., Wang, J., Zheng, J., Tang, W.

To be published

Released	2003-02-04
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Cytochrome c, iso-1 (protein)
Unique Ligands	HEC, IMD

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1Y9X \| pdb_00001y9x	Download File View File

Solution structure of Archaeon DNA-binding protein ssh10b

Cui, Q., Tong, Y., Wang, J.

(2008) Biochemistry 47: 11212-11221

Released	2005-06-21
Method	SOLUTION NMR
Organisms	Saccharolobus shibatae
Macromolecule	DNA/RNA-binding protein Alba 1 (protein)

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2IQJ \| pdb_00002iqj	Download File View File

Crystal structure of the GAP domain of SMAP1L (LOC64744) stromal membrane-associated protein 1-like

Tong, Y., Dimov, S., Shen, L., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Stromal membrane-associated protein 1-like (protein)
Unique Ligands	BME, UNX, ZN

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2JPH \| pdb_00002jph	Download File View File

NMR solution structure of the Rho GTPase binding domain of human plexin-b1

Tong, Y., Buck, M.

(2008) Structure 16: 246-258

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Plexin-B1 (protein)

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2OLM \| pdb_00002olm	Download File View File

ArfGap domain of HIV-1 Rev binding protein

Tong, Y., Tempel, W., Shen, L., Dimov, S., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Nucleoporin-like protein RIP (protein)
Unique Ligands	GOL, SO4, UNL, UNX, ZN

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2P57 \| pdb_00002p57	Download File View File

GAP domain of ZNF289, an ID1-regulated zinc finger protein

Tong, Y., Dimov, S., Shen, L., Zhu, H., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	GTPase-activating protein ZNF289 (protein)
Unique Ligands	UNX, ZN

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2PQE \| pdb_00002pqe	Download File View File

Solution structure of proline-free mutant of staphylococcal nuclease

Shan, L., Tong, Y., Xie, T., Wang, M., Wang, J.

(2007) Biochemistry 46: 11504-11513

Released	2007-06-19
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	Thermonuclease (protein)

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2QFZ \| pdb_00002qfz	Download File View File

Crystal structure of human TBC1 domain family member 22A

Tong, Y., Tempel, W., Dimov, S., Dong, A., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	TBC1 domain family member 22A (protein)
Unique Ligands	UNX

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2QQ8 \| pdb_00002qq8	Download File View File

Crystal structure of the putative RabGAP domain of human TBC1 domain family member 14

Tong, Y., Tempel, W., Dimov, S., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-08-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	TBC1 domain family member 14 (protein)
Unique Ligands	UNX

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2R2O \| pdb_00002r2o	Download File View File

Crystal structure of the effector domain of human Plexin B1

Tong, Y., Tempel, W., Shen, L., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

(2007) J Biological Chem 282: 37215-37224

Released	2007-09-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Plexin-B1 (protein)
Unique Ligands	UNX

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2REX \| pdb_00002rex	Download File View File

Crystal structure of the effector domain of PLXNB1 bound with Rnd1 GTPase

Tong, Y., Tempel, W., Shen, L., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Plexin-B1 (protein) Rho-related GTP-binding protein Rho6 (protein)
Unique Ligands	CA, GNP, MG, UNX

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3C5C \| pdb_00003c5c	Download File View File

Crystal structure of human Ras-like, family 12 protein in complex with GDP

Shen, L., Tong, Y., Tempel, W., Loppnau, P., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-02-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	RAS-like protein 12 (protein)
Unique Ligands	GDP, MG, UNX

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3C5H \| pdb_00003c5h	Download File View File

Crystal structure of the Ras homolog domain of human GRLF1 (p190RhoGAP)

Shen, L., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-02-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Glucocorticoid receptor DNA-binding factor 1 (protein)
Unique Ligands	GNP, MG, UNX

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3CBQ \| pdb_00003cbq	Download File View File

Crystal structure of the human REM2 GTPase with bound GDP

Nedyalkova, L., Shen, Y., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	GTP-binding protein REM 2 (protein)
Unique Ligands	EDO, GDP, MG, UNX

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3CON \| pdb_00003con	Download File View File

Crystal structure of the human NRAS GTPase bound with GDP

Nedyalkova, L., Tong, Y., Tempel, W., Shen, L., Loppnau, P., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.649 Å
Organisms	Homo sapiens
Macromolecule	GTPase NRas (protein)
Unique Ligands	GDP, MG, UNX

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3CPF \| pdb_00003cpf	Download File View File

Crystal structure of human eukaryotic translation initiation factor EIF5A

Nedyalkova, L., Tong, Y., Tempel, W., Hong, B., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

(2009) Proteins 75: 1040-1045

Released	2008-04-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 5A-1 (protein)
Unique Ligands	UNX

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3CXL \| pdb_00003cxl	Download File View File

Crystal structure of human chimerin 1 (CHN1)

Shen, L., Buck, M., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Wilkstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	N-chimerin (protein)
Unique Ligands	UNX, ZN

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3DWD \| pdb_00003dwd	Download File View File

Crystal structure of the ArfGAP domain of human ARFGAP1

Nedyalkova, L., Tong, Y., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Wilkstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor GTPase-activating protein 1 (protein)
Unique Ligands	UNX, ZN

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3DZ8 \| pdb_00003dz8	Download File View File

Crystal structure of human Rab3B GTPase bound with GDP

Shen, Y., Tong, Y., Sukumar, D., Tempel, W., Loppnau, P., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Wilkstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-08-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-3B (protein)
Unique Ligands	GDP, UNX

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3EAP \| pdb_00003eap	Download File View File

Crystal structure of the RhoGAP domain of ARHGAP11A

Shen, Y., Shen, L., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium, Structural Genomics Consortium (SGC)

To be published

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Rho GTPase-activating protein 11A (protein)
Unique Ligands	UNX

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3EO2 \| pdb_00003eo2	Download File View File

Crystal structure of the RhoGEF domain of human neuroepithelial cell-transforming gene 1 protein

Nedyalkova, L., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Neuroepithelial cell-transforming gene 1 protein (protein)
Unique Ligands	UNX

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3EO3 \| pdb_00003eo3	Download File View File

Crystal structure of the N-acetylmannosamine kinase domain of human GNE protein

Nedyalkova, L., Tong, Y., Rabeh, W.M., Hong, B., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

(2009) PLoS One 4: e7165-e7165

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (protein)
Unique Ligands	UNX, ZN

1 to 25 of 115 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1K9O | pdb_00001k9o

1M60 | pdb_00001m60

1NI1 | pdb_00001ni1

1NMI | pdb_00001nmi

1Y9X | pdb_00001y9x

2IQJ | pdb_00002iqj

2JPH | pdb_00002jph

2OLM | pdb_00002olm

2P57 | pdb_00002p57

2PQE | pdb_00002pqe

2QFZ | pdb_00002qfz

2QQ8 | pdb_00002qq8

2R2O | pdb_00002r2o

2REX | pdb_00002rex

3C5C | pdb_00003c5c

3C5H | pdb_00003c5h

3CBQ | pdb_00003cbq

3CON | pdb_00003con

3CPF | pdb_00003cpf

3CXL | pdb_00003cxl

3DWD | pdb_00003dwd

3DZ8 | pdb_00003dz8

3EAP | pdb_00003eap

3EO2 | pdb_00003eo2

3EO3 | pdb_00003eo3