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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Vieira, P.S."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Xanthomonas citri pv. citri str. 306 (10)
	Amycolatopsis mediterranei (5)
	Chromobacterium violaceum (4)
	Aureobasidium namibiae CBS 147.97 (3)
	Leishmania major (3)
	Streptomyces sp. F-1 (2)
	Cryptococcus neoformans (1)
	Leishmania braziliensis (1)
	Lentinula edodes (1)
	Rasamsonia emersonii (1)

More...

Taxonomy

	Bacteria (24)
	Eukaryota (10)
	unclassified sequences (2)

Experimental Method

X-RAY DIFFRACTION (36)

Polymer Entity Type

Protein (36)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (19)
	2.0 - 2.5 (8)
	2.5 - 3.0 (6)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (9)
	2020 - 2024 (26)

Enzyme Classification Name

	Transferases (4)
	Isomerases (2)

Symmetry Type

	Asymmetric (19)
	Cyclic (13)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	Artifacts (4)
	Alpha and beta proteins (a/b) (3)
	All beta proteins (1)

AllSelected

1 to 25 of 36 Structures

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4KPC \| pdb_00004kpc	Download File View File

Crystal structure of the nucleoside diphosphate kinase b from Leishmania braziliensis

Vieira, P.S., Giuseppe, P.O., Santos, C.R., Cunha, E.M.F., de Oliveira, A.H.C., Murakami, M.T.

(2015) BMC Struct Biol 15: 2-2

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Leishmania braziliensis
Macromolecule	Nucleoside diphosphate kinase b (protein)
Unique Ligands	PO4

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5C7P \| pdb_00005c7p	Download File View File

Structure of Leishmania nucleoside diphostate kinase mutant P95S

Vieira, P.S., de Giuseppe, P.O., de Oliveira, A.H.C., Murakami, M.T.

(2015) J Struct Biol 192: 336-341

Released	2015-10-14
Method	X-RAY DIFFRACTION 3.144 Å
Organisms	Leishmania major
Macromolecule	Nucleoside diphosphate kinase (protein)

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5CAA \| pdb_00005caa	Download File View File

Structure of Leishmania nucleoside diphosphate kinase mutant P100S/del5-Cterm

Vieira, P.S., de Giuseppe, P.O., de Oliveira, A.H.C., Murakami, M.T.

(2015) J Struct Biol 192: 336-341

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Leishmania major
Macromolecule	Nucleoside diphosphate kinase (protein)

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5CAB \| pdb_00005cab	Download File View File

Structure of Leishmania nucleoside diphostate kinase mutant Del5-Cterm

Vieira, P.S., de Giuseppe, P.O., de Oliveira, A.H.C., Murakami, M.T.

(2015) J Struct Biol 192: 336-341

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.953 Å
Organisms	Leishmania major
Macromolecule	Nucleoside diphosphate kinase (protein)
Unique Ligands	SO4

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6BYC \| pdb_00006byc	Download File View File

Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	ACT, GOL, PEG

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6BYE \| pdb_00006bye	Download File View File

Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri in complex with mannose

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.126 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	ACT, BMA

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6BYG \| pdb_00006byg	Download File View File

Crystal structure of the nucleophile mutant (E575A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	BMA

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6BYI \| pdb_00006byi	Download File View File

Crystal structure of the acid-base mutant (E477A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	BMA

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6EB4 \| pdb_00006eb4	Download File View File

OhrB (Organic Hydroperoxide Resistance protein) from Chromobacterium violaceum

Domingos, R.M., Teixeira, R.D., Alegria, T.G.P., Vieira, P.S., Murakami, M.T., Netto, L.E.S.

(2020) ACS Catal

Released	2020-02-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Chromobacterium violaceum
Macromolecule	Organic hydroperoxide resistance protein (protein)
Unique Ligands	PEG

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6EBC \| pdb_00006ebc	Download File View File

OhrB (Organic Hydroperoxide Resistance protein) wild type from Chromobacterium violaceum and reduced by DTT

Domingos, R.M., Teixeira, R.D., Alegria, T.G.P., Vieira, P.S., Murakami, M.T., Netto, L.E.S.

(2020) ACS Catal

Released	2020-02-12
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Chromobacterium violaceum
Macromolecule	Organic hydroperoxide resistance protein (protein)
Unique Ligands	CL, DTT

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6EBD \| pdb_00006ebd	Download File View File

OhrB (Organic Hydroperoxide Resistance protein) mutant (C60A) from Chromobacterium violaceum, interacting with dihydrolipoamide

Domingos, R.M., Teixeira, R.D., Alegria, T.G.P., Vieira, P.S., Murakami, M.T., Netto, L.E.S.

(2020) ACS Catal

Released	2020-02-12
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Chromobacterium violaceum
Macromolecule	Organic hydroperoxide resistance protein (protein)
Unique Ligands	CL, J3S

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6EBG \| pdb_00006ebg	Download File View File

Ohr (Organic Hydroperoxide Resistance protein) mutant - C60S interacting with dihydrolipoamide

Domingos, R.M., Teixeira, R.D., Alegria, T.G.P., Vieira, P.S., Murakami, M.T., Netto, L.E.S.

(2020) ACS Catal

Released	2020-02-05
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Chromobacterium violaceum
Macromolecule	Organic hydroperoxide resistance protein (protein)
Unique Ligands	J3S

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6N98 \| pdb_00006n98	Download File View File

Xylose isomerase 1F1 variant from Streptomyces sp. F-1

Miyamoto, R.Y., Vieira, P.S., Murakami, M.T., Zanphorlin, L.M.

(2020) Biochim Biophys Acta Gen Subj 1864: 129549-129549

Released	2019-12-04
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Streptomyces sp. F-1
Macromolecule	Xylose isomerase (protein)
Unique Ligands	MG, SO4

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6N99 \| pdb_00006n99	Download File View File

Xylose isomerase 2F1 variant from Streptomyces sp. F-1

Miyamoto, R.Y., Vieira, P.S., Murakami, M.T., Zanphorlin, L.M.

(2020) Biochim Biophys Acta Gen Subj 1864: 129549-129549

Released	2019-12-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptomyces sp. F-1
Macromolecule	Xylose isomerase (protein)
Unique Ligands	MG, MPD, SO4

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6UAS \| pdb_00006uas	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E199A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaripentaose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glycoside Hydrolase (protein)
Unique Ligands	BGC, PEG, ZN
Unique branched monosaccharides	BGC, GLC

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6UAT \| pdb_00006uat	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E102A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaripentaose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	ZN
Unique branched monosaccharides	BGC

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6UAU \| pdb_00006uau	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E102A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaritriose and laminaribiose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	PEG, ZN
Unique branched monosaccharides	BGC

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6UAX \| pdb_00006uax	Download File View File

Crystal structure of a GH128 (subgroup II) endo-beta-1,3-glucanase from Sorangium cellulosum (ScGH128_II)

Santos, C.R., Costa, P.A.C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Vieira, P.S., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Sorangium cellulosum So ce56
Macromolecule	Hypothetical serine rich protein (protein)
Unique Ligands	CA, CL, EPE, TRS

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6UB2 \| pdb_00006ub2	Download File View File

Crystal structure of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV)

Santos, C.R., Lima, E.A., Mandelli, F., Vieira, P.S., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lentinula edodes
Macromolecule	Endo-beta-1,3-glucanase (protein)
Unique Ligands	CL, MES, SO4

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6UB8 \| pdb_00006ub8	Download File View File

Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI)

Santos, C.R., Vieira, P.S., Domingues, M.N., Cordeiro, R.L., Tomazini, A., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aureobasidium namibiae CBS 147.97
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	GOL

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6UBA \| pdb_00006uba	Download File View File

Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI) in complex with laminaritriose

Santos, C.R., Vieira, P.S., Domingues, M.N., Cordeiro, R.L., Tomazini, A., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aureobasidium namibiae CBS 147.97
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC

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6UBB \| pdb_00006ubb	Download File View File

Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI) with laminaribiose at the surface-binding site

Santos, C.R., Vieira, P.S., Domingues, M.N., Cordeiro, R.L., Tomazini, A., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Aureobasidium namibiae CBS 147.97
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC

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6UBC \| pdb_00006ubc	Download File View File

Crystal structure of a GH128 (subgroup VII) oligosaccharide-binding protein from Cryptococcus neoformans (CnGH128_VII)

Santos, C.R., Costa, P.A.C.R., Souza, B.P., Vieira, P.S., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Cryptococcus neoformans
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)

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6UFL \| pdb_00006ufl	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E199Q mutant) from Amycolatopsis mediterranei (AmGH128_I) in the complex with laminarihexaose

Cordeiro, R.L., Domingues, M.N., Vieira, P.S., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC