RCSB PDB: Search

1AFC \| pdb_00001afc	Download File View File

STRUCTURAL STUDIES OF THE BINDING OF THE ANTI-ULCER DRUG SUCROSE OCTASULFATE TO ACIDIC FIBROBLAST GROWTH FACTOR

Zhu, X., Hsu, B.T., Rees, D.C.

(1993) Structure 1: 27-34

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	ACIDIC FIBROBLAST GROWTH FACTOR (protein)
Unique branched monosaccharides	GU4, YYJ

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1BAR \| pdb_00001bar	Download File View File

THREE-DIMENSIONAL STRUCTURES OF ACIDIC AND BASIC FIBROBLAST GROWTH FACTORS

Zhu, X., Komiya, H., Chirino, A., Faham, S., Fox, G.M., Arakawa, T., Hsu, B.T., Rees, D.C.

(1991) Science 251: 90-93

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	ACIDIC FIBROBLAST GROWTH FACTOR (protein)

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1BAS \| pdb_00001bas	Download File View File

THREE-DIMENSIONAL STRUCTURES OF ACIDIC AND BASIC FIBROBLAST GROWTH FACTORS

Chirino, A.J., Rees, D.C.

(1991) Science 251: 90-93

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	BASIC FIBROBLAST GROWTH FACTOR (protein)

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1BFB \| pdb_00001bfb	Download File View File

BASIC FIBROBLAST GROWTH FACTOR COMPLEXED WITH HEPARIN TETRAMER FRAGMENT

Faham, S., Rees, D.C.

(1996) Science 271: 1116-1120

Released	1996-04-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	BASIC FIBROBLAST GROWTH FACTOR (protein)
Unique branched monosaccharides	IDS, SGN, UAP

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1BFC \| pdb_00001bfc	Download File View File

BASIC FIBROBLAST GROWTH FACTOR COMPLEXED WITH HEPARIN HEXAMER FRAGMENT

Faham, S., Rees, D.C.

(1996) Science 271: 1116-1120

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	BASIC FIBROBLAST GROWTH FACTOR (protein)
Unique branched monosaccharides	IDS, SGN, UAP

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1IVZ \| pdb_00001ivz	Download File View File

Solution structure of the SEA domain from murine hypothetical protein homologous to human mucin 16

Maeda, T., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 13174-13182

Released	2002-10-02
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	hypothetical protein 1110008I14RIK (protein)

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1UFN \| pdb_00001ufn	Download File View File

Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)

Tochio, N., Kobayashi, N., Koshiba, S., Kigawa, T., Inoue, M., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Matsuo, Y., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-06-22
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	putative nuclear protein homolog 5830484A20Rik (protein)

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1UG2 \| pdb_00001ug2	Download File View File

Solution Structure of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous to Myb DNA-binding Domain

Zhao, C., Kigawa, T., Tochio, N., Koshiba, S., Inoue, M., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-06-22
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	2610100B20Rik gene product (protein)

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1UG7 \| pdb_00001ug7	Download File View File

Solution structure of four helical up-and-down bundle domain of the hypothetical protein 2610208M17Rik similar to the protein FLJ12806

Li, H., Kigawa, T., Tomizawa, T., Koshiba, S., Inoue, M., Shirouzu, M., Terada, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-08-17
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	2610208M17Rik protein (protein)

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1UG8 \| pdb_00001ug8	Download File View File

NMR structure of the R3H domain from Poly(A)-specific Ribonuclease

Nagata, T., Muto, Y., Hayami, N., Uda, H., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-08-17
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Poly(A)-specific Ribonuclease (protein)

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1UGJ \| pdb_00001ugj	Download File View File

Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16

Nagashima, T., Hayashi, F., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-08-03
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	RIKEN cDNA 2310057J16 protein (protein)

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1UH6 \| pdb_00001uh6	Download File View File

Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06

Hayashi, F., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-12-25
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	ubiquitin-like 5 (protein)

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1UHR \| pdb_00001uhr	Download File View File

Solution structure of the SWIB domain of mouse BRG1-associated factor 60a

Yamada, K., Saito, K., Nameki, N., Inoue, M., Koshiba, S., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Matsuda, T., Seki, E., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-08-24
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily D member 1 (protein)

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1UHS \| pdb_00001uhs	Download File View File

Solution structure of mouse homeodomain-only protein HOP

Saito, K., Koshiba, S., Inoue, M., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Matsuda, T., Seki, E., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-07-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	homeodomain only protein (protein)

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1UHW \| pdb_00001uhw	Download File View File

Solution structure of the DEP domain of mouse pleckstrin

Inoue, K., Yoshida, M., Hatta, R., Hayashi, F., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Tanaka, A., Osanai, T., Matsuo, Y., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-01-11
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Pleckstrin (protein)

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1UKX \| pdb_00001ukx	Download File View File

Solution structure of the RWD domain of mouse GCN2

Nameki, N., Yoneyama, M., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Protein Sci 13: 2089-2100

Released	2004-08-03
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	GCN2 eIF2alpha kinase (protein)

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1UMJ \| pdb_00001umj	Download File View File

Crystal structure of Pyrococcus horikoshii CutA in the presence of 3M guanidine hydrochloride

Tanaka, Y., Tsumoto, K., Yasutake, Y., Sakai, N., Yao, M., Tanaka, I., Kumagai, I.

(2004) Biochem Biophys Res Commun 323: 185-191

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	periplasmic divalent cation tolerance protein CutA (protein)
Unique Ligands	GAI

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1V9J \| pdb_00001v9j	Download File View File

Solution structure of a BolA-like protein from Mus musculus

Kasai, T., Inoue, M., Koshiba, S., Yabuki, T., Aoki, M., Nunokawa, E., Seki, E., Matsuda, T., Matsuda, N., Tomo, Y., Shirouzu, M., Terada, T., Obayashi, N., Hamana, H., Shinya, N., Tatsuguchi, A., Yasuda, S., Yoshida, M., Hirota, H., Matsuo, Y., Tani, K., Suzuki, H., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Protein Sci 13: 545-548

Released	2004-02-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	BolA-like protein RIKEN cDNA 1110025L05 (protein)

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1WOL \| pdb_00001wol	Download File View File

Crystal Structure of ST0689, an archaeal HEPN homologue

Arakawa, T., Akutsu, J., Yohda, M.

To be published

Released	2005-11-22
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	122aa long conserved hypothetical protein (protein)
Unique Ligands	TBU

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2AFG \| pdb_00002afg	Download File View File

2.0 ANGSTROM X-RAY STRUCTURE OF HUMAN ACIDIC FIBROBLAST GROWTH FACTOR

Blaber, M., Disalvo, J., Thomas, K.A.

(1996) Biochemistry 35: 2086-2094

Released	1995-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ACIDIC FIBROBLAST GROWTH FACTOR (protein)
Unique Ligands	SO4

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2DD4 \| pdb_00002dd4	Download File View File

Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus recombinant apo-enzyme

Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.

(2007) J Mol Biology 366: 1497-1509

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase alpha subunit (protein) Thiocyanate hydrolase beta subunit (protein) Thiocyanate hydrolase gamma subunit (protein)
Unique Ligands	FRU, TLA

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2DD5 \| pdb_00002dd5	Download File View File

Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus native holo-enzyme

Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.

(2007) J Mol Biology 366: 1497-1509

Released	2007-01-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase alpha subunit (protein) Thiocyanate hydrolase beta subunit (protein) Thiocyanate hydrolase gamma subunit (protein)
Unique Ligands	3CO, SO4

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2DX7 \| pdb_00002dx7	Download File View File

Crystal structure of Pyrococcus horikoshii OT3 aspartate racemase complex with citric acid

Ohtaki, A., Arakawa, T., Iizuka, R., Odaka, M., Yohda, M.

(2008) Proteins 70: 1167-1174

Released	2007-08-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	aspartate racemase (protein)
Unique Ligands	CIT

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2DXB \| pdb_00002dxb	Download File View File

Recombinant thiocyanate hydrolase comprising partially-modified cobalt centers

Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.

(2009) J Am Chem Soc 131: 14838-14843

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase subunit alpha (protein) Thiocyanate hydrolase subunit beta (protein) Thiocyanate hydrolase subunit gamma (protein)
Unique Ligands	3CO, PO4

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2DXC \| pdb_00002dxc	Download File View File

Recombinant thiocyanate hydrolase, fully-matured form

Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.

(2009) J Am Chem Soc 131: 14838-14843

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase subunit alpha (protein) Thiocyanate hydrolase subunit beta (protein) Thiocyanate hydrolase subunit gamma (protein)
Unique Ligands	3CO, TLA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AFC | pdb_00001afc

1BAR | pdb_00001bar

1BAS | pdb_00001bas

1BFB | pdb_00001bfb

1BFC | pdb_00001bfc

1IVZ | pdb_00001ivz

1UFN | pdb_00001ufn

1UG2 | pdb_00001ug2

1UG7 | pdb_00001ug7

1UG8 | pdb_00001ug8

1UGJ | pdb_00001ugj

1UH6 | pdb_00001uh6

1UHR | pdb_00001uhr

1UHS | pdb_00001uhs

1UHW | pdb_00001uhw

1UKX | pdb_00001ukx

1UMJ | pdb_00001umj

1V9J | pdb_00001v9j

1WOL | pdb_00001wol

2AFG | pdb_00002afg

2DD4 | pdb_00002dd4

2DD5 | pdb_00002dd5

2DX7 | pdb_00002dx7

2DXB | pdb_00002dxb

2DXC | pdb_00002dxc