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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Batyuk, A."

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Search Summary

This query matches 210 Structures.

Refinements

Structure Determination Methodology

experimental (210)

Scientific Name of Source Organism

	Homo sapiens (38)
	Thermosynechococcus vestitus BP-1 (38)
	synthetic construct (33)
	Halobacterium salinarum NRC-1 (19)
	Escherichia coli (17)
	Severe acute respiratory syndrome coronavirus 2 (16)
	Aspergillus nidulans FGSC A4 (15)
	Aequorea victoria (11)
	Tequatrovirus T4 (10)
	Pseudomonas protegens Pf-5 (9)

More...

Taxonomy

	Bacteria (101)
	Eukaryota (71)
	other sequences (33)
	Archaea (26)
	Riboviria (16)
	Duplodnaviria (10)

Experimental Method

X-RAY DIFFRACTION (210)

Polymer Entity Type

Protein (210)

Refinement Resolution (Å)

	1.0 - 1.5 (20)
	1.5 - 2.0 (63)
	2.0 - 2.5 (62)
	2.5 - 3.0 (41)
	3.0 - 3.5 (20)
	3.5 - 4.0 (4)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (105)
	2020 - 2024 (101)

Enzyme Classification Name

	Oxidoreductases (68)
	Hydrolases (34)
	Translocases (3)
	Transferases (4)
	Lyases (1)

Membrane Protein Annotation

	mpstruc (66)
	PDBTM (69)
	OPM (23)
	MemProtMD (48)

Symmetry Type

	Asymmetric (89)
	Cyclic (109)
	Dihedral (16)

SCOP Classification

	Membrane and cell surface proteins and peptides (22)
	All beta proteins (24)
	All alpha proteins (7)
	Alpha and beta proteins (a+b) (9)
	Artifacts (6)
	Small proteins (3)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 210 Structures

Page 1 of 9

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3ZEV \| pdb_00003zev	Download File View File

Structure of Thermostable Agonist-bound Neurotensin Receptor 1 Mutant without Lysozyme Fusion

Egloff, P., Hillenbrand, M., Schlinkmann, K.M., Batyuk, A., Mittl, P., Plueckthun, A.

(2014) Proc Natl Acad Sci U S A 111: E655

Released	2014-01-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rattus norvegicus
Macromolecule	NEUROTENSIN (protein) NEUROTENSIN RECEPTOR 1 TM86V (protein)
Unique Ligands	GLY

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4BUO \| pdb_00004buo	Download File View File

High Resolution Structure of Thermostable Agonist-bound Neurotensin Receptor 1 Mutant without Lysozyme Fusion

Egloff, P., Hillenbrand, M., Schlinkmann, K.M., Batyuk, A., Mittl, P., Plueckthun, A.

(2014) Proc Natl Acad Sci U S A 111: E655

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Rattus norvegicus
Macromolecule	NEUROTENSIN RECEPTOR TYPE 1 (protein) NEUROTENSIN/NEUROMEDIN N (protein)
Unique Ligands	GLY

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4BV0 \| pdb_00004bv0	Download File View File

High Resolution Structure of Evolved Agonist-bound Neurotensin Receptor 1 Mutant without Lysozyme Fusion

Egloff, P., Hillenbrand, M., Scott, D.J., Schlinkmann, K.M., Heine, P., Balada, S., Batyuk, A., Mittl, P., Schuetz, M., Plueckthun, A.

(2014) Proc Natl Acad Sci U S A 111: E655-E662

Released	2014-01-29
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Rattus norvegicus
Macromolecule	NEUROTENSIN RECEPTOR TYPE 1 (protein) NEUROTENSIN/NEUROMEDIN N (protein)

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4BWB \| pdb_00004bwb	Download File View File

Structure of Evolved Agonist-bound Neurotensin Receptor 1 Mutant without Lysozyme Fusion

Egloff, P., Hillenbrand, M., Scott, D.J., Schlinkmann, K.M., Heine, P., Balada, S., Batyuk, A., Mittl, P., Plueckthun, A.

(2014) Proc Natl Acad Sci U S A 111: E655

Released	2014-01-29
Method	X-RAY DIFFRACTION 3.57 Å
Organisms	Rattus norvegicus
Macromolecule	NEUROTENSIN (protein) NEUROTENSIN RECEPTOR TYPE 1 (protein)

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5AAO \| pdb_00005aao	Download File View File

Crystal structure of fluorogen-activating designed ankyrin repeat protein (DARPin) dimer in complex with malachite green

Batyuk, A., Schuetz, M., Kummer, L., Wu, Y., Mittl, P., Plueckthun, A.

(2016) J Mol Biology 428: 1272-1289

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	synthetic construct
Macromolecule	FAD3210 (protein)
Unique Ligands	6FE

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5AQ7 \| pdb_00005aq7	Download File View File

DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography

Batyuk, A., Wu, Y., Honegger, A., Heberling, M., Plueckthun, A.

(2016) J Mol Biology 428: 1574

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	D12_DB04V3 (protein)
Unique Ligands	MLI

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5AQ8 \| pdb_00005aq8	Download File View File

DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography

Batyuk, A., Wu, Y., Honegger, A., Heberling, M., Plueckthun, A.

(2016) J Mol Biology 428: 1574

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	synthetic construct
Macromolecule	OFF7_DB12V4 (protein)
Unique Ligands	EPE, SCN

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5AQ9 \| pdb_00005aq9	Download File View File

DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography

Batyuk, A., Wu, Y., Honegger, A., Heberling, M., Plueckthun, A.

(2016) J Mol Biology 428: 1574

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	MALTOSE-BINDING PERIPLASMIC PROTEIN (protein) OFF7_DB08V4 (protein)

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5AQA \| pdb_00005aqa	Download File View File

DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography

Batyuk, A., Wu, Y., Honegger, A., Heberling, M., Plueckthun, A.

(2016) J Mol Biology 428: 1574

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	synthetic construct
Macromolecule	OFF7_DB04V3 (protein)
Unique Ligands	SCN

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5AQB \| pdb_00005aqb	Download File View File

DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography

Batyuk, A., Wu, Y., Honegger, A., Heberling, M., Plueckthun, A.

(2016) J Mol Biology 428: 1574

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Aequorea victoria synthetic construct
Macromolecule	3G61_DB15V4 (protein) GREEN FLUORESCENT PROTEIN (protein)

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5FIN \| pdb_00005fin	Download File View File

DARPins as a new tool for experimental phasing in protein crystallography

Batyuk, A., Honegger, A., Andres, F., Briand, C., Gruetter, M., Plueckthun, A.

To be published

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	synthetic construct
Macromolecule	NI3C DARPIN MUTANT5 HG-SITE N1 (protein)
Unique Ligands	HG

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5FIO \| pdb_00005fio	Download File View File

DARPins as a new tool for experimental phasing in protein crystallography

Batyuk, A., Honegger, A., Andres, F., Briand, C., Gruetter, M., Plueckthun, A.

To be published

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	MALTOSE-BINDING PERIPLASMIC PROTEIN (protein) NI3C DARPIN MUTANT5 HG-SITE N1 (protein)
Unique Ligands	HG

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5K2A \| pdb_00005k2a	Download File View File

2.5 angstrom A2a adenosine receptor structure with sulfur SAD phasing using XFEL data

Batyuk, A., Galli, L., Ishchenko, A., Han, G.W., Gati, C., Popov, P., Lee, M.-Y., Stauch, B., White, T.A., Barty, A., Aquila, A., Hunter, M.S., Liang, M., Boutet, S., Pu, M., Liu, Z.-J., Nelson, G., James, D., Li, C., Zhao, Y., Spence, J.C.H., Liu, W., Fromme, P., Katritch, V., Weierstall, U., Stevens, R.C., Cherezov, V., GPCR Network (GPCR)

(2016) Sci Adv 2: e1600292-e1600292

Released	2016-09-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a/Soluble cytochrome b562 chimera (protein)
Unique Ligands	CLR, NA, OLA, OLC, PEG, ZMA

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5K2B \| pdb_00005k2b	Download File View File

2.5 angstrom A2a adenosine receptor structure with MR phasing using XFEL data

(2016) Sci Adv 2: e1600292-e1600292

Released	2016-09-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a/Soluble cytochrome b562 chimera (protein)
Unique Ligands	CLR, NA, OLA, OLB, OLC, ZMA

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5K2C \| pdb_00005k2c	Download File View File

1.9 angstrom A2a adenosine receptor structure with sulfur SAD phasing and phase extension using XFEL data

(2016) Sci Adv 2: e1600292-e1600292

Released	2016-09-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a/Soluble cytochrome b562 chimera (protein)
Unique Ligands	CLR, NA, OLA, OLC, PEG, ZMA

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5K2D \| pdb_00005k2d	Download File View File

1.9A angstrom A2a adenosine receptor structure with MR phasing using XFEL data

(2016) Sci Adv 2: e1600292-e1600292

Released	2016-09-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a/Soluble cytochrome b562 chimera (protein)
Unique Ligands	CLR, NA, OLA, OLB, OLC, PEG, ZMA