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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Burkart, M.D."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Escherichia coli K-12 (10)
	Escherichia coli (6)
	Nicotiana tabacum (5)
	Brevibacillus parabrevis (4)
	Homo sapiens (4)
	Pseudomonas protegens Pf-5 (4)
	Amycolatopsis orientalis (3)
	Streptomyces coelicolor (3)
	Streptomyces sp. MSC090213JE08 (3)
	Prodigiosinella confusarubida (2)

More...

Taxonomy

	Bacteria (36)
	Eukaryota (10)

Experimental Method

	X-RAY DIFFRACTION (40)
	ELECTRON MICROSCOPY (3)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (15)
	2.0 - 2.5 (16)
	2.5 - 3.0 (7)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (1)
	2010 - 2014 (6)
	2015 - 2019 (12)
	2020 - 2024 (25)

Enzyme Classification Name

	Lyases (12)
	Transferases (18)
	Isomerases (6)
	Ligases (3)
	Oxidoreductases (3)

Symmetry Type

	Asymmetric (26)
	Cyclic (16)
	Dihedral (4)

SCOP Classification

	All alpha proteins (14)
	Alpha and beta proteins (a/b) (11)
	Alpha and beta proteins (a+b) (3)
	All beta proteins (3)
	Artifacts (3)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 46 Structures

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1OFN \| pdb_00001ofn	Download File View File

Purification, crystallisation and preliminary structural studies of dTDP-4-keto-6-deoxy-glucose-5-epimerase (EvaD) from Amycolatopsis orientalis; the fourth enzyme in the dTDP-L-epivancosamine biosynthetic pathway.

Merkel, A.B., Naismith, J.H.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1226

Released	2004-04-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Amycolatopsis orientalis
Macromolecule	PCZA361.16 (protein)
Unique Ligands	GOL

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1OI6 \| pdb_00001oi6	Download File View File

Structure determination of the TMP-complex of EvaD

Merkel, A.B., Naismith, J.H.

(2004) J Biological Chem 279: 32684

Released	2004-06-03
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Amycolatopsis orientalis
Macromolecule	PCZA361.16 (protein)
Unique Ligands	GOL, TMP

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1WA4 \| pdb_00001wa4	Download File View File

Crystal structure of the M131F L135A EvaD double mutant

Merkel, A.B., Naismith, J.H.

To be published

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Amycolatopsis orientalis
Macromolecule	PCZA361.16 (protein)
Unique Ligands	GOL

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2N5H \| pdb_00002n5h	Download File View File

PltL-holo

Jaremko, M.J., Lee, D.J., Burkart, M.D.

(2015) J Am Chem Soc 137: 11546-11549

Released	2015-09-16
Method	SOLUTION NMR
Organisms	Pseudomonas protegens Pf-5
Macromolecule	Peptidyl carrier protein PltL (protein)
Unique Ligands	PNS

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2N5I \| pdb_00002n5i	Download File View File

PltL-pyrrolyl

Jaremko, M.J., Lee, D.J., Burkart, M.D.

(2015) J Am Chem Soc 137: 11546-11549

Released	2015-09-16
Method	SOLUTION NMR
Organisms	Pseudomonas protegens Pf-5
Macromolecule	Peptidyl carrier protein PltL (protein)
Unique Ligands	4EM

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4CL6 \| pdb_00004cl6	Download File View File

Crystal Structure of 3-hydroxydecanoyl-Acyl Carrier Protein Dehydratase (FabA) from Pseudomonas aeruginosa in complex with N-(4- Chlorobenzyl)-3-(2-furyl)-1H-1,2,4-triazol-5-amine

Moynie, L., McMahon, S.A., Duthie, F.G., Naismith, J.H.

(2016) J Mol Biology 428: 108-120

Released	2015-01-21
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	3-HYDROXYDECANOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE (protein)
Unique Ligands	7SB

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4DBZ \| pdb_00004dbz	Download File View File

Crystal Structure of V151L Actinorhodin Polyketide Ketoreductase with NADPH

Javidpour, P., Tsai, S.-C.

(2013) Chem Biol 20: 1225-1234

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.643 Å
Organisms	Streptomyces coelicolor
Macromolecule	Ketoacyl reductase (protein)
Unique Ligands	NDP

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4DC0 \| pdb_00004dc0	Download File View File

Crystal Structure of F189W Actinorhodin Polyketide Ketoreductase with NADPH

Javidpour, P., Tsai, S.-C.

(2013) Chem Biol 20: 1225-1234

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.813 Å
Organisms	Streptomyces coelicolor
Macromolecule	Ketoacyl reductase (protein)
Unique Ligands	NDP

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4DC1 \| pdb_00004dc1	Download File View File

Crystal Structure of Y202F Actinorhodin Polyketide Ketoreductase with NADPH

Javidpour, P., Tsai, S.-C.

(2013) Chem Biol 20: 1225-1234

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Streptomyces coelicolor
Macromolecule	Ketoacyl reductase (protein)
Unique Ligands	NDP

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4KEH \| pdb_00004keh	Download File View File

Crosslinked Crystal Structure of Type II Fatty Synthase Dehydratase, FabA, and Acyl Carrier Protein, AcpP

Nguyen, C., Haushalter, R., Finzel, K., Leong, J., Le, B.C., Burkart, M., Tsai, S.C.

(2014) Nature 505: 427-431

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Escherichia coli
Macromolecule	Acyl carrier protein (protein) N-{3-[DIHYDROXY(NONYL)-LAMBDA~4~-SULFANYL]PROPYL}-N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE (protein)
Unique Ligands	1R3

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4QJK \| pdb_00004qjk	Download File View File

Crystal structure of M. tuberculosis phosphopantetheinyl transferase PptT

Noel, J.P., Burkart, M.D., Vickery, C.R.

(2014) ACS Chem Biol 9: 1939-1944

Released	2014-07-16
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Phosphopantetheinyl transferase PptT (protein)
Unique Ligands	COA, SO4

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4QJL \| pdb_00004qjl	Download File View File

Crystal structure of M. ulcerans phosphopantetheinyl transferase MuPPT

Noel, J.P., Burkart, M.D., Vickery, C.R.

(2014) ACS Chem Biol 9: 1939-1944

Released	2014-07-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mycobacterium ulcerans Agy99
Macromolecule	Phosphopantetheinyl transferase, PptII (protein)
Unique Ligands	COA, MG

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5IK0 \| pdb_00005ik0	Download File View File

Tobacco 5-epi-aristolochene synthase with FPP

Koo, H.J., Xu, Y., Louie, G.V., Bowman, M., Noel, J.P.

(2016) J Antibiot (Tokyo) 69: 524-533

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Nicotiana tabacum
Macromolecule	5-epi-aristolochene synthase (protein)
Unique Ligands	FPP, MG

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5IK6 \| pdb_00005ik6	Download File View File

Tobacco 5-epi-aristolochene synthase with germacrene A and PPi

Koo, H.J., Xu, Y., Louie, G.V., Bowman, M., Noel, J.P.

(2016) J Antibiot (Tokyo) 69: 524-533

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Nicotiana tabacum
Macromolecule	5-epi-aristolochene synthase (protein)
Unique Ligands	CRE, DPO, MG

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5IK9 \| pdb_00005ik9	Download File View File

Tobacco 5-epi-aristolochene with farnesyl monophosphate

Koo, H.J., Xu, Y., Louie, G.V., Bowman, M., Noel, J.P.

(2016) J Antibiot (Tokyo) 69: 524-533

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Nicotiana tabacum
Macromolecule	5-epi-aristolochene synthase (protein)
Unique Ligands	FJP, MG

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5IKA \| pdb_00005ika	Download File View File

Tobacco 5-epi-aristolochene synthase with PPi

Koo, H.J., Xu, Y., Louie, G.V., Bowman, M., Noel, J.P.

(2016) J Antibiot (Tokyo) 69: 524-533

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Nicotiana tabacum
Macromolecule	5-epi-aristolochene synthase (protein)
Unique Ligands	DPO, MG

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5IKH \| pdb_00005ikh	Download File View File

Tobacco 5-epi-aristolochene synthase M4 mutant with (-)-premnaspirodiene

Koo, H.J., O'Maille, P.E., Louie, G.V., Bowman, M., Noel, J.P.

(2016) J Antibiot (Tokyo) 69: 524-533

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Nicotiana tabacum
Macromolecule	5-epi-aristolochene synthase (protein)
Unique Ligands	6BW, MG

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5JDX \| pdb_00005jdx	Download File View File

PigG holo

Jaremko, M.J., Lee, D.J., Burkart, M.D.

To be published

Released	2017-08-23
Method	SOLUTION NMR
Organisms	Serratia sp. (in: enterobacteria)
Macromolecule	Putative peptidyl carrier protein (protein)
Unique Ligands	PNS

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5KBZ \| pdb_00005kbz	Download File View File

Structure of the PksA Product Template domain in complex with a phosphopantetheine mimetic

Tsai, S.C., Burkart, M.D., Townsend, C.A., Barajas, J.F., Shakya, G., Topper, C.L., Moreno, G., Jackson, D.R., Rivera, H., La Clair, J.J., Vagstad, A.

(2017) Proc Natl Acad Sci U S A 114: E4142-E4148

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.803 Å
Organisms	Aspergillus parasiticus
Macromolecule	Noranthrone synthase (protein)
Unique Ligands	3B2

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5KOF \| pdb_00005kof	Download File View File

Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, FabB, and Acyl Carrier Protein, AcpP

Milligan, J.C., Jackson, D.R., Barajas, J.F., Tsai, S.C.

(2019) Nat Chem Biol 15: 669-671

Released	2018-01-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 1 (protein) Acyl carrier protein (protein)
Unique Ligands	6W5

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6KXD \| pdb_00006kxd	Download File View File

The ishigamide ketosynthase/chain length factor

Du, D., Katsuyama, Y., Horiuchi, M., Fushinobu, S., Chen, A., Davis, T., Burkart, M., Ohnishi, Y.

(2020) Nat Chem Biol 16: 776-782

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptomyces sp. MSC090213JE08
Macromolecule	Ketosynthase (protein)
Unique Ligands	ACT, EDO, PO4

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6KXE \| pdb_00006kxe	Download File View File

The ishigamide ketosynthase/chain length factor

Du, D., Katsuyama, Y., Horiuchi, M., Fushinobu, S., Chen, A., Davis, T., Burkart, M., Ohnishi, Y.

(2020) Nat Chem Biol 16: 776-782

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Streptomyces sp. MSC090213JE08
Macromolecule	Ketosynthase (protein)
Unique Ligands	ACT, EDO, PO4, PPI

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6KXF \| pdb_00006kxf	Download File View File

The ishigamide ketosynthase/chain length factor

Du, D., Katsuyama, Y., Horiuchi, M., Fushinobu, S., Chen, A., Davis, T., Burkart, M., Ohnishi, Y.

(2020) Nat Chem Biol 16: 776-782

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Streptomyces sp. MSC090213JE08
Macromolecule	ACP (protein) Ketosynthase (protein)
Unique Ligands	DYF

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6N3P \| pdb_00006n3p	Download File View File

Crosslinked AcpP=FabZ complex from E. coli Type II FAS

Smith, J.L., Dodge, G.J.

(2019) Proc Natl Acad Sci U S A 116: 6775-6783

Released	2019-03-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ (protein) Acyl carrier protein (protein)
Unique Ligands	XLN

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6O6E \| pdb_00006o6e	Download File View File

Crystal structure of PltF trapped with PltL using a proline adenosine vinylsulfonamide inhibitor

Corpuz, J.C., Podust, L.M.

(2020) RSC Chem Biol 1: 8-12

Released	2020-04-08
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Pseudomonas protegens Pf-5
Macromolecule	L-proline--[L-prolyl-carrier protein] ligase (protein) Peptidyl carrier protein PltL (protein)
Unique Ligands	FMT, I5M, MLA, TRS

1 to 25 of 46 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1OFN | pdb_00001ofn

1OI6 | pdb_00001oi6

1WA4 | pdb_00001wa4

2N5H | pdb_00002n5h

2N5I | pdb_00002n5i

4CL6 | pdb_00004cl6

4DBZ | pdb_00004dbz

4DC0 | pdb_00004dc0

4DC1 | pdb_00004dc1

4KEH | pdb_00004keh

4QJK | pdb_00004qjk

4QJL | pdb_00004qjl

5IK0 | pdb_00005ik0

5IK6 | pdb_00005ik6

5IK9 | pdb_00005ik9

5IKA | pdb_00005ika

5IKH | pdb_00005ikh

5JDX | pdb_00005jdx

5KBZ | pdb_00005kbz

5KOF | pdb_00005kof

6KXD | pdb_00006kxd

6KXE | pdb_00006kxe

6KXF | pdb_00006kxf

6N3P | pdb_00006n3p

6O6E | pdb_00006o6e