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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Chin, J.W."

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Search Summary

This query matches 53 Structures.

Refinements

Structure Determination Methodology

experimental (53)

Scientific Name of Source Organism

	Homo sapiens (30)
	Escherichia coli BL21(DE3) (8)
	Photorhabdus thracensis (8)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (6)
	Streptomyces tsusimaensis (5)
	synthetic construct (4)
	Crimean-Congo hemorrhagic fever virus strain IbAr10200 (3)
	Human immunodeficiency virus 1 (3)
	Aequorea victoria (2)
	Vibrio maritimus (2)

More...

Taxonomy

	Eukaryota (32)
	Bacteria (18)
	Riboviria (12)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (44)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

	Protein (53)
	DNA (6)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (16)
	2.0 - 2.5 (13)
	2.5 - 3.0 (8)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	> 4.5 (7)

Release Date

	2010 - 2014 (23)
	2015 - 2019 (14)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (11)
	Transferases (5)
	Isomerases (4)

Symmetry Type

	Asymmetric (41)
	Cyclic (14)
	Dihedral (1)
	Helical (1)

SCOP Classification

	All alpha proteins (11)
	Alpha and beta proteins (a+b) (7)
	All beta proteins (4)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 53 Structures

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2X25 \| pdb_00002x25	Download File View File

Free acetyl-CypA orthorhombic form

Lammers, M., Neumann, H., Chin, J.W., James, L.C.

(2010) Nat Chem Biol 6: 331

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein)

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2X2A \| pdb_00002x2a	Download File View File

Free acetyl-CypA trigonal form

Lammers, M., Neumann, H., Chin, J.W., James, L.C.

(2010) Nat Chem Biol 6: 331

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein)
Unique Ligands	GOL, SO4

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2X2C \| pdb_00002x2c	Download File View File

acetyl-CypA:cyclosporine complex

Lammers, M., Neumann, H., Chin, J.W., James, L.C.

(2010) Nat Chem Biol 6: 331

Released	2010-03-23
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein)

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2X2D \| pdb_00002x2d	Download File View File

acetyl-CypA:HIV-1 N-term capsid domain complex

Lammers, M., Neumann, H., Chin, J.W., James, L.C.

(2010) Nat Chem Biol 6: 331

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	CAPSID PROTEIN P24 (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein)

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2XK5 \| pdb_00002xk5	Download File View File

Crystal structure of K6-linked diubiquitin

Virdee, S., Chin, J.W., Komander, D.

(2010) Nat Chem Biol 6: 750

Released	2010-08-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN (protein)
Unique Ligands	ZN

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2YBG \| pdb_00002ybg	Download File View File

Structure of Lys120-acetylated p53 core domain

Arbely, E., Allen, M.D., Joerger, A.C., Fersht, A.R.

(2011) Proc Natl Acad Sci U S A 108: 8251

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	CELLULAR TUMOR ANTIGEN P53 (protein)
Unique Ligands	ZN

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3PHU \| pdb_00003phu	Download File View File

OTU Domain of Crimean Congo Hemorrhagic Fever Virus

Akutsu, M., Ye, Y., Virdee, S., Komander, D.

(2011) Proc Natl Acad Sci U S A 108: 2228-2233

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Crimean-Congo hemorrhagic fever virus strain IbAr10200
Macromolecule	RNA-directed RNA polymerase L (protein)
Unique Ligands	GOL

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3PHW \| pdb_00003phw	Download File View File

OTU Domain of Crimean Congo Hemorrhagic Fever Virus in complex with Ubiquitin

Akutsu, M., Ye, Y., Virdee, S., Komander, D.

(2011) Proc Natl Acad Sci U S A 108: 2228-2233

Released	2011-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Crimean-Congo hemorrhagic fever virus strain IbAr10200 Homo sapiens
Macromolecule	RNA-directed RNA polymerase L (protein) Ubiquitin-40S ribosomal protein S27a (protein)
Unique Ligands	NEH

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3PHX \| pdb_00003phx	Download File View File

OTU Domain of Crimean Congo Hemorrhagic Fever Virus in complex with ISG15

Akutsu, M., Ye, Y., Virdee, S., Komander, D.

(2011) Proc Natl Acad Sci U S A 108: 2228-2233

Released	2011-02-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Crimean-Congo hemorrhagic fever virus strain IbAr10200 Homo sapiens
Macromolecule	RNA-directed RNA polymerase L (protein) Ubiquitin-like protein ISG15 (protein)
Unique Ligands	ACY, NEH, ZN

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3ZRH \| pdb_00003zrh	Download File View File

Crystal structure of the Lys29, Lys33-linkage-specific TRABID OTU deubiquitinase domain reveals an Ankyrin-repeat ubiquitin binding domain (AnkUBD)

Licchesi, J.D.F., Akutsu, M., Komander, D.

(2011) Nat Struct Mol Biol 19: 62

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE ZRANB1 (protein)
Unique Ligands	CL, EDO

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4B4N \| pdb_00004b4n	Download File View File

CPSF6 defines a conserved capsid interface that modulates HIV-1 replication

Price, A.J., James, L.C.

(2012) PLoS Pathog 8: 2896

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.813 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6 (protein) GAG PROTEIN (protein)

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4H9N \| pdb_00004h9n	Download File View File

Complex structure 1 of DAXX/H3.3(sub5)/H4

Elsasser, S.J., Huang, H., Lewis, P.W., Chin, J.W., Allis, D.C., Patel, D.J.

To be published

Released	2012-10-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Death domain-associated protein 6 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	PO4

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4H9O \| pdb_00004h9o	Download File View File

Complex structure 2 of DAXX/H3.3(sub5,G90M)/H4

Elsasser, S.J., Huang, H., Lewis, P.W., Chin, J.W., Allis, D.C., Patel, D.J.

To be published

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.053 Å
Organisms	Homo sapiens
Macromolecule	Death domain-associated protein 6 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	PO4

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4H9P \| pdb_00004h9p	Download File View File

Complex structure 3 of DAXX/H3.3(sub5,G90A)/H4

Elsasser, S.J., Huang, H., Lewis, P.W., Chin, J.W., Allis, D.C., Patel, D.J.

To be published

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.198 Å
Organisms	Homo sapiens
Macromolecule	Death domain-associated protein 6 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	PO4

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4H9Q \| pdb_00004h9q	Download File View File

Complex structure 4 of DAXX(E225A)/H3.3(sub5)/H4

Elsasser, S.J., Huang, H., Lewis, P.W., Chin, J.W., Allis, D.C., Patel, D.J.

To be published

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Death domain-associated protein 6 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	PO4

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4H9R \| pdb_00004h9r	Download File View File

Complex structure 5 of DAXX(E225A)/H3.3(sub5,G90A)/H4

Elsasser, S.J., Huang, H., Lewis, P.W., Chin, J.W., Allis, D.C., Patel, D.J.

To be published

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.197 Å
Organisms	Homo sapiens
Macromolecule	Death domain-associated protein 6 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	PO4

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4H9S \| pdb_00004h9s	Download File View File

Complex structure 6 of DAXX/H3.3(sub7)/H4

Elsasser, S.J., Huang, H., Lewis, P.W., Chin, J.W., Allis, D.C., Patel, D.J.

To be published

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Death domain-associated protein 6 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	PO4

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4U0A \| pdb_00004u0a	Download File View File

Hexameric HIV-1 CA in complex with CPSF6 peptide, P6 crystal form

Price, A.J., Jacques, D.A., James, L.C.

(2014) PLoS Pathog 10: e1004459-e1004459

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Capsid protein p24 (protein) Cleavage and polyadenylation specificity factor subunit 6 (protein)
Unique Ligands	CL

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4U0B \| pdb_00004u0b	Download File View File

Hexamer HIV-1 CA in complex with CPSF6 peptide, P212121 crystal form

Price, A.J., Jacques, D.A., James, L.C.

(2014) PLoS Pathog 10: e1004459-e1004459

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Capsid protein p24 (protein) Cleavage and polyadenylation specificity factor subunit 6 (protein)

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4U0C \| pdb_00004u0c	Download File View File

Hexameric HIV-1 CA in complex with Nup153 peptide, P6 crystal form

Price, A.J., Jacques, D.A., James, L.C.

(2014) PLoS Pathog 10: e1004459-e1004459

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Capsid protein p24 (protein) Nuclear pore complex protein Nup153 (protein)

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4U0D \| pdb_00004u0d	Download File View File

Hexameric HIV-1 CA in complex with Nup153 peptide, P212121 crystal form

Price, A.J., Jacques, D.A., James, L.C.

(2014) PLoS Pathog 10: e1004459-e1004459

Released	2014-11-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Gag polyprotein (protein) Nuclear pore complex protein Nup153 (protein)
Unique Ligands	CL

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4U0E \| pdb_00004u0e	Download File View File

Hexameric HIV-1 CA in complex with PF3450074

Price, A.J., Jacques, D.A., James, L.C.

(2014) PLoS Pathog 10: e1004459-e1004459

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.043 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Capsid protein p24 (protein)
Unique Ligands	1B0, CL

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4U0F \| pdb_00004u0f	Download File View File

Hexameric HIV-1 CA in Complex with BI-2

Price, A.J., Jacques, D.A., James, L.C.

(2014) PLoS Pathog 10: e1004459-e1004459

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Capsid protein p24 (protein)
Unique Ligands	3A8, EDO

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4WIP \| pdb_00004wip	Download File View File

DIX domain of human Dvl2

Fiedler, M., Bienz, M., Madrzak, J., Chin, J.W.

(2015) Nat Commun 6: 6718-6718

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.691 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)
Unique Ligands	1PE

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5FR2 \| pdb_00005fr2	Download File View File

Farnesylated RhoA-GDP in complex with RhoGDI-alpha, lysine acetylated at K178

Kuhlmann, N., Wroblowski, S., Knyphausen, P., de Boor, S., Brenig, J., Zienert, A.Y., Meyer-Teschendorf, K., Praefcke, G.J.K., Nolte, H., Krueger, M., Schacherl, M., Baumann, U., James, L.C., Chin, J.W., Lammers, M.

(2016) J Biological Chem 291: 5484

Released	2016-01-13
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	RHO GDP-DISSOCIATION INHIBITOR 1 (protein) TRANSFORMING PROTEIN RHOA (protein)
Unique Ligands	BGC, FAR, GDP, MG

1 to 25 of 53 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2X25 | pdb_00002x25

2X2A | pdb_00002x2a

2X2C | pdb_00002x2c

2X2D | pdb_00002x2d

2XK5 | pdb_00002xk5

2YBG | pdb_00002ybg

3PHU | pdb_00003phu

3PHW | pdb_00003phw

3PHX | pdb_00003phx

3ZRH | pdb_00003zrh

4B4N | pdb_00004b4n

4H9N | pdb_00004h9n

4H9O | pdb_00004h9o

4H9P | pdb_00004h9p

4H9Q | pdb_00004h9q

4H9R | pdb_00004h9r

4H9S | pdb_00004h9s

4U0A | pdb_00004u0a

4U0B | pdb_00004u0b

4U0C | pdb_00004u0c

4U0D | pdb_00004u0d

4U0E | pdb_00004u0e

4U0F | pdb_00004u0f

4WIP | pdb_00004wip

5FR2 | pdb_00005fr2