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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Commodore, L."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Mus musculus (5)
	Oryctolagus cuniculus (4)
	Rattus norvegicus (3)

Taxonomy

Eukaryota (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (6)

Enzyme Classification Name

	Transferases (5)
	Oxidoreductases (4)

Symmetry Type

	Asymmetric (8)
	Dihedral (4)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	Alpha and beta proteins (a/b) (4)
	Artifacts (4)
	All alpha proteins (3)

AllSelected

1 to 12 of 12 Structures

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1N41 \| pdb_00001n41	Download File View File

Crystal Structure of Annexin V K27E Mutant

Mo, Y.D., Campos, B., Mealy, T.R., Commodore, L., Head, J.F., Dedman, J.R., Seaton, B.A.

(2003) J Biological Chem 278: 2437-2443

Released	2003-02-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	annexin V (protein)
Unique Ligands	CA, SO4

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1N42 \| pdb_00001n42	Download File View File

Crystal Structure of Annexin V R149E Mutant

Mo, Y.D., Campos, B., Mealy, T.R., Commodore, L., Head, J.F., Dedman, J.R., Seaton, B.A.

(2003) J Biological Chem 278: 2437-2443

Released	2003-02-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	Annexin V (protein)
Unique Ligands	CA, SO4

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1N44 \| pdb_00001n44	Download File View File

Crystal Structure of Annexin V R23E Mutant

Mo, Y.D., Campos, B., Mealy, T.R., Commodore, L., Head, J.F., Dedman, J.R., Seaton, B.A.

(2003) J Biological Chem 278: 2437-2443

Released	2003-02-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rattus norvegicus
Macromolecule	Annexin V (protein)
Unique Ligands	CA, SO4

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3IK3 \| pdb_00003ik3	Download File View File

AP24534, a Pan-BCR-ABL Inhibitor for Chronic Myeloid Leukemia, Potently Inhibits the T315I Mutant and Overcomes Mutation-Based Resistance

Zhou, T.

(2009) Cancer Cell 16: 401-412

Released	2009-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Proto-oncogene tyrosine-protein kinase ABL1 (protein)
Unique Ligands	0LI

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3KF4 \| pdb_00003kf4	Download File View File

Structural analysis of DFG-in and DFG-out dual Src-Abl inhibitors sharing a common vinyl purine template

Zhou, T.

(2010) Chem Biol Drug Des 75: 18-28

Released	2009-12-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	B90

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3KFA \| pdb_00003kfa	Download File View File

Structural analysis of DFG-in and DFG-out dual Src-Abl inhibitors sharing a common vinyl purine template

Zhou, T.

(2010) Chem Biol Drug Des 75: 18-28

Released	2009-12-22
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Mus musculus
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	B91

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3OXZ \| pdb_00003oxz	Download File View File

Crystal structure of ABL kinase domain bound with a DFG-out inhibitor AP24534

Zhou, T., Huang, W.S., Wang, Y., Thomas, M., Keats, J., Xu, Q., Rivera, V., Shakespeare, W.C., Clackson, T., Dalgarno, D.C., Zhu, X.

(2011) Chem Biol Drug Des 77: 1-11

Released	2010-12-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	0LI

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3OY3 \| pdb_00003oy3	Download File View File

Crystal structure of ABL T315I mutant kinase domain bound with a DFG-out inhibitor AP24589

Zhou, T., Commodore, L., Huang, W.S., Wang, Y., Thomas, M., Keats, J., Xu, Q., Rivera, V., Shakespeare, W.C., Clackson, T., Dalgarno, D.C., Zhu, X.

(2011) Chem Biol Drug Des 77: 1-11

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	XY3

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4I8X \| pdb_00004i8x	Download File View File

Crystal structure of rabbit LDHA in complex with AP27460

Zhou, T., Stephan, Z.G., Kohlmann, A., Li, F., Commodore, L., Greenfield, M.T., Zhu, X., Dalgarno, D.C.

(2013) J Med Chem 56: 1023-1040

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Oryctolagus cuniculus
Macromolecule	L-lactate dehydrogenase A chain (protein)
Unique Ligands	6P3

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4I9H \| pdb_00004i9h	Download File View File

Crystal structure of rabbit LDHA in complex with AP28669

Zhou, T., Stephan, Z.G., Kohlmann, A., Li, F., Commodore, L., Greenfield, M.T., Shakespeare, W.C., Zhu, X., Dalgarno, D.C.

(2013) J Med Chem 56: 1023-1040

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Oryctolagus cuniculus
Macromolecule	L-lactate dehydrogenase A chain (protein)
Unique Ligands	1E4

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4I9N \| pdb_00004i9n	Download File View File

Crystal structure of rabbit LDHA in complex with AP28161 and AP28122

Zhou, T., Kohlmann, A., Stephan, Z.G., Li, F., Commodore, L., Greenfield, M.T., Shakespeare, W.C., Zhu, X., Dalgarno, D.C.

(2013) J Med Chem 56: 1023-1040

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Oryctolagus cuniculus
Macromolecule	L-lactate dehydrogenase A chain (protein)
Unique Ligands	1E5, 1E6

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4I9U \| pdb_00004i9u	Download File View File

Crystal structure of rabbit LDHA in complex with a fragment inhibitor AP26256

Zhou, T., Kohlmann, A., Stephan, Z.G., Commodore, L., Greenfield, M.T., Zhu, X., Dalgarno, D.C.

(2013) J Med Chem 56: 1023-1040

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Oryctolagus cuniculus
Macromolecule	L-lactate dehydrogenase A chain (protein)
Unique Ligands	1E7

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1N41 | pdb_00001n41

Crystal Structure of Annexin V K27E Mutant

1N42 | pdb_00001n42

Crystal Structure of Annexin V R149E Mutant

1N44 | pdb_00001n44

Crystal Structure of Annexin V R23E Mutant

3IK3 | pdb_00003ik3

AP24534, a Pan-BCR-ABL Inhibitor for Chronic Myeloid Leukemia, Potently Inhibits the T315I Mutant and Overcomes Mutation-Based Resistance

3KF4 | pdb_00003kf4

Structural analysis of DFG-in and DFG-out dual Src-Abl inhibitors sharing a common vinyl purine template

3KFA | pdb_00003kfa

Structural analysis of DFG-in and DFG-out dual Src-Abl inhibitors sharing a common vinyl purine template

3OXZ | pdb_00003oxz

Crystal structure of ABL kinase domain bound with a DFG-out inhibitor AP24534

3OY3 | pdb_00003oy3

Crystal structure of ABL T315I mutant kinase domain bound with a DFG-out inhibitor AP24589

4I8X | pdb_00004i8x

Crystal structure of rabbit LDHA in complex with AP27460

4I9H | pdb_00004i9h

Crystal structure of rabbit LDHA in complex with AP28669

4I9N | pdb_00004i9n

Crystal structure of rabbit LDHA in complex with AP28161 and AP28122

4I9U | pdb_00004i9u

Crystal structure of rabbit LDHA in complex with a fragment inhibitor AP26256

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1N41 | pdb_00001n41

1N42 | pdb_00001n42

1N44 | pdb_00001n44

3IK3 | pdb_00003ik3

3KF4 | pdb_00003kf4

3KFA | pdb_00003kfa

3OXZ | pdb_00003oxz

3OY3 | pdb_00003oy3

4I8X | pdb_00004i8x

4I9H | pdb_00004i9h

4I9N | pdb_00004i9n

4I9U | pdb_00004i9u