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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dhe-Paganon, S."

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Search Summary

This query matches 230 Structures.

Refinements

Structure Determination Methodology

experimental (230)

Scientific Name of Source Organism

	Homo sapiens (221)
	Danio rerio (6)
	synthetic construct (4)
	Mus musculus (3)
	Streptomyces roseus (2)
	Bacillota bacterium (1)
	Oryctolagus cuniculus (1)
	Rattus rattus (1)
	Streptomyces coelicolor A3(2) (1)
	Tolypocladium inflatum (1)

Taxonomy

	Eukaryota (228)
	Bacteria (4)
	other sequences (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (210)
	SOLUTION NMR (20)

Polymer Entity Type

	Protein (230)
	DNA (6)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (18)
	1.5 - 2.0 (77)
	2.0 - 2.5 (70)
	2.5 - 3.0 (34)
	3.0 - 3.5 (8)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (5)
	2005 - 2009 (124)
	2010 - 2014 (41)
	2015 - 2019 (21)
	2020 - 2024 (37)

Enzyme Classification Name

	Transferases (109)
	Hydrolases (61)
	Ligases (47)
	Isomerases (15)
	Lyases (3)
	Oxidoreductases (2)

Membrane Protein Annotation

OPM (4)

Symmetry Type

	Asymmetric (194)
	Cyclic (45)
	Dihedral (10)

SCOP Classification

	Alpha and beta proteins (a+b) (89)
	Artifacts (47)
	All beta proteins (30)
	All alpha proteins (17)
	Alpha and beta proteins (a/b) (8)
	Membrane and cell surface proteins and peptides (2)
	Small proteins (1)

AllSelected

1 to 25 of 230 Structures

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1EKG \| pdb_00001ekg	Download File View File

MATURE HUMAN FRATAXIN

Dhe-Paganon, S., Shigeta, R., Chi, Y.I., Ristow, M., Shoelson, S.E.

(2000) J Biological Chem 275: 30753-30756

Released	2000-11-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	FRATAXIN (protein)

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1IC8 \| pdb_00001ic8	Download File View File

HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCT

Chi, Y.-I., Frantz, J.D., Oh, B.-C., Hansen, L., Dhe-Paganon, S., Shoelson, S.E.

(2002) Mol Cell 10: 1129-1137

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	HEPATOCYTE NUCLEAR FACTOR 1-ALPHA (protein) 5'-D(CPTPTPGPGPTPTPAPAPTPAPAPTPTPCPAPCPCPAPGPA)-3' (nucleic acid) 5'-D(TPCPTPGPGPTPGPAPAPTPTPAPTPTPAPAPCPCPAPAPG)-3' (nucleic acid)

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1IFR \| pdb_00001ifr	Download File View File

Structure of Lamin A/C Globular Domain

Dhe-Paganon, S., Werner, E.D., Shoelson, S.E.

(2002) J Biological Chem 277: 17381-17384

Released	2002-07-17
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Lamin A/C (protein)
Unique Ligands	GOL

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1M7W \| pdb_00001m7w	Download File View File

HNF4a ligand binding domain with bound fatty acid

Dhe-Paganon, S., Duda, K., Iwamoto, M., Chi, Y.I., Shoelson, S.E.

(2002) J Biological Chem 277: 37973-37976

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus rattus
Macromolecule	Hepatocyte nuclear factor 4-alpha (protein)
Unique Ligands	DAO

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1Q2H \| pdb_00001q2h	Download File View File

Phenylalanine Zipper Mediates APS Dimerization

Dhe-Paganon, S., Werner, E.D., Nishi, M., Chi, Y.-I., Shoelson, S.E.

(2004) Nat Struct Mol Biol 11: 968-974

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	adaptor protein with pleckstrin homology and src homology 2 domains (protein)

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1QQG \| pdb_00001qqg	Download File View File

CRYSTAL STRUCTURE OF THE PH-PTB TARGETING REGION OF IRS-1

Dhe-Paganon, S., Shoelson, S.E.

(1999) Proc Natl Acad Sci U S A 96: 8378-8383

Released	1999-08-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	INSULIN RECEPTOR SUBSTRATE 1 (protein)

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1Y6L \| pdb_00001y6l	Download File View File

Human ubiquitin conjugating enzyme E2E2

Walker, J.R., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Bochkarev, A., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2E2 (protein)

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1YH2 \| pdb_00001yh2	Download File View File

Ubiquitin-Conjugating Enzyme HSPC150

Walker, J.R., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-02-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HSPC150 protein similar to ubiquitin-conjugating enzyme (protein)

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1YLA \| pdb_00001yla	Download File View File

Ubiquitin-conjugating enzyme E2-25 kDa (Huntington interacting protein 2)

Choe, J., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Bochkarev, A., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-paganon, S., Structural Genomics Consortium (SGC)

(2010) J Biological Chem 285: 36070-36080

Released	2005-02-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2-25 kDa (protein)

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1YQB \| pdb_00001yqb	Download File View File

Human Ubiquilin 3

Walker, J.R., Xue, S., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2005-02-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ubiquilin 3 (protein)

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1YRV \| pdb_00001yrv	Download File View File

Novel Ubiquitin-Conjugating Enzyme

Walker, J.R., Choe, J., Avvakumov, G.V., Newman, E.M., MacKenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	ubiquitin-conjugating ligase MGC351130 (protein)

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1Z6U \| pdb_00001z6u	Download File View File

Np95-like ring finger protein isoform b [Homo sapiens]

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Np95-like ring finger protein isoform b (protein)
Unique Ligands	ZN

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1ZDN \| pdb_00001zdn	Download File View File

Ubiquitin-conjugating enzyme E2S

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-05-03
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2S (protein)
Unique Ligands	NA

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1ZIV \| pdb_00001ziv	Download File View File

Catalytic Domain of Human Calpain-9

Walker, J.R., Davis, T., Newman, E.M., Mackenzie, F., Dong, A., Choe, J., Arrowsmith, C., Sundstrom, M., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2007) J Mol Biology 366: 216-229

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Calpain 9 (protein)
Unique Ligands	BME, CA

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1ZKC \| pdb_00001zkc	Download File View File

Crystal Structure of the cyclophiln_RING domain of human peptidylprolyl isomerase (cyclophilin)-like 2 isoform b

Walker, J.R., Davis, T., Newman, E.M., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2010) PLoS Biol 8: e1000439-e1000439

Released	2005-08-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase like 2 (protein)
Unique Ligands	BME

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1ZKH \| pdb_00001zkh	Download File View File

Solution structure of a human ubiquitin-like domain in SF3A1

Lukin, J.A., Dhe-Paganon, S., Guido, V., Lemak, A., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Sundstrom, M., Edwards, A., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

To be published

Released	2005-05-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Splicing factor 3 subunit 1 (protein)

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1ZUO \| pdb_00001zuo	Download File View File

Structure of Human Ubiquitin-Conjugating Enzyme (UBCi) Involved in Embryo Attachment and Implantation

Walker, J.R., Avvakumov, G.V., Cui, H., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Hypothetical protein LOC92912 (protein)
Unique Ligands	BME

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2A2N \| pdb_00002a2n	Download File View File

Crystal Structure of the peptidylprolyl isomerase domain of Human PPWD1

Walker, J.R., Davis, T.L., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2008) FEBS J 275: 2283-2295

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	peptidylprolyl isomerase domain and WD repeat containing 1 (protein)
Unique Ligands	GOL

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2A4D \| pdb_00002a4d	Download File View File

Structure of the human ubiquitin-conjugating enzyme E2 variant 1 (UEV-1)

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-07-12
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 variant 1 (protein)

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2A7L \| pdb_00002a7l	Download File View File

Structure of the human hypothetical ubiquitin-conjugating enzyme, LOC55284

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-09-06
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Hypothetical ubiquitin-conjugating enzyme LOC55284 (protein)
Unique Ligands	NA

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2A9U \| pdb_00002a9u	Download File View File

Structure of the N-terminal domain of Human Ubiquitin carboxyl-terminal hydrolase 8 (USP8)

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, E., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2006) J Biological Chem 281: 38061-38070

Released	2005-08-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 8 (protein)

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2ARY \| pdb_00002ary	Download File View File

Catalytic domain of Human Calpain-1

Walker, J.R., Davis, T., Lunin, V., Newman, E.M., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2007) J Mol Biology 366: 216-229

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Calpain-1 catalytic subunit (protein)
Unique Ligands	BME, CA

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2AWF \| pdb_00002awf	Download File View File

Structure of human Ubiquitin-conjugating enzyme E2 G1

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Finerty, P., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 G1 (protein)

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2AWG \| pdb_00002awg	Download File View File

Structure of the PPIase domain of the Human FK506-binding protein 8

Walker, J.R., Davis, T., Newman, E.M., Finerty, P., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2005-09-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	38 kDa FK-506 binding protein (protein)

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2ESL \| pdb_00002esl	Download File View File

Human Cyclophilin C in Complex with Cyclosporin A

Walker, J.R., Davis, T., Newman, E.M., Finerty Jr., P.J., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2010) PLoS Biol 8: e1000439-e1000439

Released	2005-12-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	CYCLOSPORIN A (protein) Peptidyl-prolyl cis-trans isomerase C (protein)
Unique Ligands	CA, SO4, ZN

1 to 25 of 230 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1EKG | pdb_00001ekg

1IC8 | pdb_00001ic8

1IFR | pdb_00001ifr

1M7W | pdb_00001m7w

1Q2H | pdb_00001q2h

1QQG | pdb_00001qqg

1Y6L | pdb_00001y6l

1YH2 | pdb_00001yh2

1YLA | pdb_00001yla

1YQB | pdb_00001yqb

1YRV | pdb_00001yrv

1Z6U | pdb_00001z6u

1ZDN | pdb_00001zdn

1ZIV | pdb_00001ziv

1ZKC | pdb_00001zkc

1ZKH | pdb_00001zkh

1ZUO | pdb_00001zuo

2A2N | pdb_00002a2n

2A4D | pdb_00002a4d

2A7L | pdb_00002a7l

2A9U | pdb_00002a9u

2ARY | pdb_00002ary

2AWF | pdb_00002awf

2AWG | pdb_00002awg

2ESL | pdb_00002esl